Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0421
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55999| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)              28   3.1  
SB_17718| Best HMM Match : Ribosomal_L2 (HMM E-Value=7.3)              27   5.5  
SB_38090| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   6.4  
SB_25375| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_55999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 308 YTFHAPRNEIKYKKFSFHRRGSAQY 234
           +TFH P+N +  +K +FH R + ++
Sbjct: 18  FTFHGPKNGLVNRKITFHGRRNRRF 42


>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 269  KFSFHRRGSAQYGLT*DIYLYVGNTIDIRTSEQMITIVDKIFLRLFCKLFFRESHHYN 96
            KFS HR     + +    ++Y    +D        + +   F+R+FCK F+R   H N
Sbjct: 1017 KFSTHRIDPIYFSIF-MCFMYTNAALDPIVLILFNSEIRMAFIRVFCKRFYRVDPHSN 1073


>SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)
          Length = 335

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 269 KFSFHRRGSAQYGLT*DIYLYVGNTIDIRTSEQMITIVDKIFLRLFCKLFFRESHHYN 96
           KFS HR     + +    ++Y    +D        + +   F+R+FCK F+R   H N
Sbjct: 264 KFSTHRIDPIYFSIF-MCFMYTNAALDPIVLILFNSEIRMAFIRVFCKRFYRVDPHSN 320


>SB_17718| Best HMM Match : Ribosomal_L2 (HMM E-Value=7.3)
          Length = 112

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 308 YTFHAPRNEIKYKKFSFHRRGSAQYGLT 225
           +TF+ P+N +  +K +FH R + ++ +T
Sbjct: 13  FTFYGPKNGLVNRKITFHGRRNRRFHVT 40


>SB_38090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 23.8 bits (49), Expect(2) = 6.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 236 IGHYHDDEMKTFCI*SHCVVRGMCNY 313
           IG+YHD+E     + S  +V G+ NY
Sbjct: 306 IGNYHDNERDKTGMPSSILVLGIGNY 331



 Score = 21.8 bits (44), Expect(2) = 6.4
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +2

Query: 230 VRIGHYHDDE 259
           +RIG+YHD+E
Sbjct: 291 LRIGNYHDNE 300


>SB_25375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +2

Query: 32  HIIEKK*SNSTINLCNLVKTNYCNDVIL*RIIYKRVLKRFCQQSLSFVH 178
           H +    +++  N+CN   TN CN  +   I+Y   L      +L+ ++
Sbjct: 68  HTLTNMCNHTLTNMCNHTLTNMCNHTL--TIMYNHTLTNMYNHTLTIMY 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,655,999
Number of Sequences: 59808
Number of extensions: 228531
Number of successful extensions: 360
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)