Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0421
         (453 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    29   2.9  
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    29   2.9  
AY113457-1|AAM29462.1|  825|Drosophila melanogaster RE36839p pro...    29   3.9  
AE014134-594|AAF51118.1|   90|Drosophila melanogaster CG15411-PA...    27   8.9  

>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
           Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 128 YKRVLKRFCQQSLSFVHLFECLLYFLHINKYLK*VRIGHYHDDEMKTFCI 277
           Y R + R C++++ F    EC   F+H+   L    +  Y  D  K FCI
Sbjct: 570 YSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQY-PDFSKEFCI 618


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 128 YKRVLKRFCQQSLSFVHLFECLLYFLHINKYLK*VRIGHYHDDEMKTFCI 277
           Y R + R C++++ F    EC   F+H+   L    +  Y  D  K FCI
Sbjct: 333 YSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQY-PDFSKEFCI 381


>AY113457-1|AAM29462.1|  825|Drosophila melanogaster RE36839p
           protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 128 YKRVLKRFCQQSLSFVHLFECLLYFLHINKYLK*VRIGHYHDDEMKTFCI 277
           Y R + R C++++ F    +C   F H+ K L    +  Y  D  K FCI
Sbjct: 464 YSRHITRLCKKNVKFEWTADCQHAFEHLKKQLMNPTLLKY-PDFSKEFCI 512


>AE014134-594|AAF51118.1|   90|Drosophila melanogaster CG15411-PA
           protein.
          Length = 90

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 349 KSASQSARPKNIIVTHSTHHAMRSNTKSFH 260
           KSASQ A PK++   HS  H   S+T+  H
Sbjct: 51  KSASQGALPKSLATAHSLFH-RPSSTQGKH 79


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,996,677
Number of Sequences: 53049
Number of extensions: 318316
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1476622287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)