Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0421
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.095
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.3  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 0.095
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 26  LPHIIEKK*SNSTINLCNLVKTNYCNDVIL*RII 127
           +PH +++K     IN C+L+K    ND  L R+I
Sbjct: 117 VPHELKEKHLTQRINSCDLLKKRNENDPFLKRLI 150


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 367 LANKILKSASQSARPKNIIVTHSTHH 290
           L NK+ K A +  R  ++  THS  H
Sbjct: 624 LRNKVYKLAMERERDASLSSTHSHPH 649


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 359 QNIEISESISAP*KYHSYTFHAPRNEIKYKKFS 261
           + +EIS+         SY    PRN  + +K S
Sbjct: 189 KQVEISQMTEPSSSTKSYVLEGPRNGKRKRKSS 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,871
Number of Sequences: 438
Number of extensions: 2234
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)