Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0419
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5FMY9 Cluster: Putative integrase; n=1; Lactobacillus ...    33   7.0  
UniRef50_O60984 Cluster: D2-like; n=1; Dictyostelium discoideum|...    32   9.3  

>UniRef50_Q5FMY9 Cluster: Putative integrase; n=1; Lactobacillus
           acidophilus|Rep: Putative integrase - Lactobacillus
           acidophilus
          Length = 411

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 24/81 (29%), Positives = 37/81 (45%)
 Frame = -1

Query: 465 LIVVYTTNKQKKTLSITTTRNRC*KNTIYLTDSVATQDK*SSGQA*DSMQEYFEHTLTYT 286
           L++ YT   +KK  SIT T NR  K ++ L +    Q+K    Q  D  Q +F     + 
Sbjct: 66  LLIEYTKFVEKKAQSITATTNRSWKYSLTLLNEYLEQEKKIDIQLRDVDQHFFN---DFG 122

Query: 285 ECRIKTVPKFCLNKIVIYNNT 223
              +K  PK  + K  + + T
Sbjct: 123 HWYLKNHPKASVKKSTVIDVT 143


>UniRef50_O60984 Cluster: D2-like; n=1; Dictyostelium
           discoideum|Rep: D2-like - Dictyostelium discoideum
           (Slime mold)
          Length = 868

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 318 QEYFEHTLTYTECRIKTVPKFCLNKIVIYNNTKLRPRHPLEKSTLT 181
           +E+  HT+TY     K   KFC N++ I   T+L     LEK +LT
Sbjct: 728 KEFMNHTVTYQTNLKKVKAKFCFNEVCITFETELE----LEKFSLT 769


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,784,925
Number of Sequences: 1657284
Number of extensions: 12108237
Number of successful extensions: 24587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24582
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)