Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0419
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    29   0.70 
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   5.0  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   6.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   8.7  

>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -1

Query: 234 YNNTKLRPRHPLEKSTLTPRAITIYNSPLLCATSIPF**LRNKFVKLFQTTSINDIKKY 58
           Y++T L P+ PL  + LT   + +  S L   T+  +  L N FV      +IND++KY
Sbjct: 297 YSSTIL-PQQPLHPALLTKSKVWL-GSSLQTVTNPTWLSLGNHFVLATSGQNINDLRKY 353


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 59  YFFMSLIEVVWNNFTNLLRN 118
           YF++ LI + WN F  +LRN
Sbjct: 661 YFWVLLIVLGWNEFMAILRN 680


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 264 PKFCLNKIVIYNNTKLRPRHPLE 196
           PK+  NK++++++ K RP   LE
Sbjct: 66  PKYAPNKLIVWDDVKERPVKELE 88


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 546 RYDHIIYSCFTKKQIFVY 493
           +Y+H++Y   +K+Q F+Y
Sbjct: 691 KYEHVVYCQLSKRQRFLY 708


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,960
Number of Sequences: 5004
Number of extensions: 58260
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)