Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0419
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.7  
SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7)               29   2.9  

>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 261  LARSLSYTLCRSMCVRSIPASNLMLVHCSICLVSLLNQSSK*CFSSI-YYA***SIMFFF 437
            L+ SL Y    ++C+ ++  S   L  C++C+++L    S  C  +I  +A   S+ + +
Sbjct: 1807 LSVSLHYLYPCTICIFALSVSLHYLSLCAVCILALFVSLSYLCLCAICIFALSVSLRYLY 1866

Query: 438  VCLLYKLQLSV 470
            +C +    LSV
Sbjct: 1867 LCAICIFALSV 1877



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 261  LARSLSYTLCRSMCVRSIPASNLMLVHCSICLVSLLNQSSK*CFSSI-YYA***SIMFFF 437
            L+ S +Y    ++C+ ++  S   L  C+IC+ +L       C  +I  +A   S+ + +
Sbjct: 1686 LSVSWNYLYLGTICIFALSVSLRYLYFCTICVFALSVSLRYLCLCAICVFALSVSLRYLY 1745

Query: 438  VCLLYKLQLSV 470
            +C +    LSV
Sbjct: 1746 LCAICIFALSV 1756


>SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7)
          Length = 519

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/43 (25%), Positives = 27/43 (62%)
 Frame = -1

Query: 585 EDFSLSTSQCEGKRYDHIIYSCFTKKQIFVYFSQLRPIKHLIV 457
           + +S +  +  G    +I++SC  +++ F+ FS+ +PI+++ V
Sbjct: 29  DGYSRAKKRFSGSYKHNILHSCQKREKYFLLFSEKKPIRYVRV 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,849
Number of Sequences: 59808
Number of extensions: 397967
Number of successful extensions: 971
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)