Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0417
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    28   0.99 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   4.0  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    25   9.2  

>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 501 DRLDLLNGRQIISLVRTLYPKLYRLVKPYKINTYRLL 391
           DR D+    Q    VR LYP +++ +K   +NTY LL
Sbjct: 145 DRFDIFAVFQ--DKVRELYPNIFKKLKVEYVNTYGLL 179


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 516 FMNLGDRLD-LLNGRQIISLVRTLYPKLYRLVKP-YKIN 406
           + NL D +D L+NG+ +  L    YPKL    KP Y+I+
Sbjct: 82  YQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQIS 120


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 244 LLEIDICSYYYD*SGHCMDNVEVFLPGS-TLVVYLLLSCV 128
           L+ I I S+Y   S H  D+V + +P S ++  Y LL+C+
Sbjct: 663 LIGIGISSFYSSISNHGNDSV-IEIPHSLSITAYFLLACL 701


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 350 VKYPGEAEQPA**IIYFYFVRVVA*KKK 267
           +KYPG+ +QP   I+  Y +R  +  KK
Sbjct: 289 IKYPGKNDQPTVPIMAGYLIRKTSFLKK 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,957
Number of Sequences: 5004
Number of extensions: 36518
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)