Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0417
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal acet...    28   3.6  
AF025378-1|AAC14016.2|  629|Caenorhabditis elegans acetylcholine...    28   3.6  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    28   4.8  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    28   4.8  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    28   4.8  
AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride ...    28   4.8  

>AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal
           acetylcholinesterase protein2 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 201 VIVWIMLRSFYQEAPSLFIYF*VVFFLRDNKIIYN 97
           V+VWI    F+   PSL +Y   VF  +++ I+ N
Sbjct: 142 VMVWIYGGGFFSGTPSLDLYSGSVFAAKEHTIVVN 176


>AF025378-1|AAC14016.2|  629|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 201 VIVWIMLRSFYQEAPSLFIYF*VVFFLRDNKIIYN 97
           V+VWI    F+   PSL +Y   VF  +++ I+ N
Sbjct: 142 VMVWIYGGGFFSGTPSLDLYSGSVFAAKEHTIVVN 176


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -1

Query: 307 FIFILFVWSPERKKFIFLPYFLLEIDICSYYYD*SGHCMDNVEVFLPGSTLVV 149
           FIF +  ++      +FLP F+L   I  +Y +  G  ++++ +  PG   +V
Sbjct: 501 FIFSIISFTLPVPSGVFLPVFVLGAAIGRFYGEIIGLALEDIHIIHPGIYAIV 553


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -1

Query: 307 FIFILFVWSPERKKFIFLPYFLLEIDICSYYYD*SGHCMDNVEVFLPGSTLVV 149
           FIF +  ++      +FLP F+L   I  +Y +  G  ++++ +  PG   +V
Sbjct: 501 FIFSIISFTLPVPSGVFLPVFVLGAAIGRFYGEIIGLALEDIHIIHPGIYAIV 553


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -1

Query: 307 FIFILFVWSPERKKFIFLPYFLLEIDICSYYYD*SGHCMDNVEVFLPGSTLVV 149
           FIF +  ++      +FLP F+L   I  +Y +  G  ++++ +  PG   +V
Sbjct: 501 FIFSIISFTLPVPSGVFLPVFVLGAAIGRFYGEIIGLALEDIHIIHPGIYAIV 553


>AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -1

Query: 307 FIFILFVWSPERKKFIFLPYFLLEIDICSYYYD*SGHCMDNVEVFLPGSTLVV 149
           FIF +  ++      +FLP F+L   I  +Y +  G  ++++ +  PG   +V
Sbjct: 429 FIFSIISFTLPVPSGVFLPVFVLGAAIGRFYGEIIGLALEDIHIIHPGIYAIV 481


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,350,700
Number of Sequences: 27780
Number of extensions: 195096
Number of successful extensions: 437
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)