Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0417
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51470.1 68418.m06383 auxin-responsive GH3 family protein sim...    28   3.4  
At5g17520.1 68418.m02055 root cap 1 (RCP1) identical to GI:6137138     27   5.9  
At1g53200.2 68414.m06029 expressed protein                             27   5.9  
At1g53200.1 68414.m06030 expressed protein                             27   5.9  
At4g39410.1 68417.m05578 WRKY family transcription factor identi...    27   7.8  

>At5g51470.1 68418.m06383 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 581

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 488 YLTDAKLFL*FEHCILN-YID*LNHTK*ILIDYCNSTNTT 372
           YL + K    +   +++ +ID L H K ++ ++C S NTT
Sbjct: 113 YLENIKFIFYYRSLVISKHIDGLEHGKGMVFNFCTSENTT 152


>At5g17520.1 68418.m02055 root cap 1 (RCP1) identical to GI:6137138
          Length = 415

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 363 NKSRSQVPW*GRAAGIINNLFLFCSCGRLKEK 268
           N + S VPW G   G++ NL L     + +EK
Sbjct: 137 NTALSAVPWLGMLTGLLGNLSLLSYFAKKREK 168


>At1g53200.2 68414.m06029 expressed protein
          Length = 474

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 224 TNIYFQ*KIRQKYKFFSFRRPHEQNKNKLF 313
           T +Y   K   K +FF F R H  N NK++
Sbjct: 442 TKVYELLKSSNKREFFKFLREHRVNGNKMY 471


>At1g53200.1 68414.m06030 expressed protein
          Length = 613

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 224 TNIYFQ*KIRQKYKFFSFRRPHEQNKNKLF 313
           T +Y   K   K +FF F R H  N NK++
Sbjct: 581 TKVYELLKSSNKREFFKFLREHRVNGNKMY 610


>At4g39410.1 68417.m05578 WRKY family transcription factor identical
           to WRKY transcription factor 13 GI:15991729 from
           [Arabidopsis thaliana]
          Length = 304

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 89  SCTLNYGLSVKNNYGHEI 36
           SC   YG S KNN+G EI
Sbjct: 132 SCQAGYGSSQKNNHGSEI 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,297,744
Number of Sequences: 28952
Number of extensions: 164427
Number of successful extensions: 266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)