Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0416
         (547 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   4.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.3  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 381 PAASLVGDYDAFGPLSSTQG 440
           P+A L G +D    +SST+G
Sbjct: 107 PSAGLCGSHDEIPDISSTRG 126


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 381 PAASLVGDYDAFGPLSSTQG 440
           P+A L G +D    +SST+G
Sbjct: 55  PSAGLCGSHDEIPDISSTRG 74


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 381 PAASLVGDYDAFGPLSSTQG 440
           P+A L G +D    +SST+G
Sbjct: 238 PSAGLCGSHDEIPDISSTRG 257


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 369 LDLRPAASLVGDYDAFGPLS 428
           LD++P AS +G +   GP S
Sbjct: 26  LDMKPDASTLGQFSPQGPNS 45


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 389 SSRPQIERHRPLRHC 345
           +SRP+++  +P +HC
Sbjct: 93  TSRPKLQEPQPSQHC 107


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 393 VKQQAADRATSPSAS 349
           VK+   DR+T+PS S
Sbjct: 141 VKEGICDRSTAPSVS 155


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 508 LKMQAEPISSSAGLQTNYSLLVTPCVELSGPKAS*SPTS 392
           L + A P   S     NYS L +     +GP    S +S
Sbjct: 251 LPLPAAPGGDSQQAALNYSTLASAVASANGPSQDPSISS 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,162
Number of Sequences: 336
Number of extensions: 1851
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)