Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0416
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    29   0.59 
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    25   9.6  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = -1

Query: 502 MQAEPISSSAGLQTNYSLLVT----PCVELSGPKAS*SPTSEAAGRRSS--DIALCVTAS 341
           + +EP  SS+   TN  +L T    P V  S    S S TS  +   SS  DIA   TAS
Sbjct: 186 VSSEPSDSSSS--TNTVILTTSVNSPAVSSSETLTSVSITSTESAYTSSSVDIAASTTAS 243

Query: 340 RMAP*SRRLASITCSVHISST 278
              P S   A+++ S  I +T
Sbjct: 244 STLPVSTSEATVSFSTDIPAT 264


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 353 RHCQSYGTVKSAAREHHVQCA 291
           +H + YG +KS    H  +CA
Sbjct: 230 KHFEQYGPLKSVVCSHRAKCA 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,114
Number of Sequences: 5004
Number of extensions: 28949
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)