Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0416
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0241 - 1866625-1868082,1868892-1869080 30 1.4
01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773 30 1.4
01_06_0335 - 28532241-28532579 29 2.4
12_02_0205 - 15506167-15507576 29 3.2
02_04_0416 + 22712004-22712195,22712296-22712377,22712464-22712663 28 4.2
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 28 4.2
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 27 9.8
10_07_0090 + 12772571-12772699,12773144-12773284 27 9.8
07_03_0763 - 21331534-21331779,21331871-21332021,21332093-213323... 27 9.8
03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160 27 9.8
>03_01_0241 - 1866625-1868082,1868892-1869080
Length = 548
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 31 ATAAHCSRAAT-CTRRRYFWRANCAYCSRAAGCARSPASDVHTVRTARVP 177
A A + RAA C RRY WR C R A A + DV V + VP
Sbjct: 24 AAAVYGDRAAVVCGERRYTWREARGRCVRLA-AALAARGDVVAVLSPNVP 72
>01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773
Length = 150
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = +2
Query: 278 RAAYVHTARDAREPPTSRCHTTGSDAEGDVARSAACCFTR 397
RAAY H R A PPTSR GS S CF+R
Sbjct: 71 RAAYDHLPRTATSPPTSR----GSGGAAASGSSYGRCFSR 106
>01_06_0335 - 28532241-28532579
Length = 112
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = -1
Query: 511 ILKMQAEPISSSAGLQTNYS---LLVTPCVELSGPKAS*SPTSEAAGRRSSDIALCVTAS 341
+L +QA P ++SA S + ++PCV SP+S + + + C+
Sbjct: 24 LLLLQATPAAASARASKKASCDLMQLSPCVSAFSGVGQGSPSSACCSKLKAQGSSCLCLY 83
Query: 340 RMAP*SRRLASITCSVHISSTCGMHARN 257
+ P +R+ S + + + C + A N
Sbjct: 84 KDDPKVKRIVSSNRTKRVFTACKVPAPN 111
>12_02_0205 - 15506167-15507576
Length = 469
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 79 YFWRANCAYCSRAAGCARSPAS 144
YF A CA C+ AAGC PA+
Sbjct: 111 YFVWAQCAPCAAAAGCLPPPAT 132
>02_04_0416 + 22712004-22712195,22712296-22712377,22712464-22712663
Length = 157
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = +2
Query: 302 RDAREPPTSRCHTTGSDAEGDVARSAACCFTRWGL*CLWATKLYAGSHE 448
R R P +RC G G A +AA W T L G H+
Sbjct: 97 RTLRRVPDTRCWLVGHHRSGGGAGAAAAVLAADAFTARWPTDLVVGRHD 145
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 28.3 bits (60), Expect = 4.2
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Frame = -1
Query: 457 YSLLVTPCVELSGPKAS*SPTSEAAGRRSSDIALCVT--ASRMAP*SRRLASITCSVHIS 284
Y L TP +PTS +A A T A R+AP + A+ +S
Sbjct: 15 YKLTSTPTPHPLAAAHPPTPTSASASAAMQMQAATTTTAARRLAPKPQPQANRCRPSSVS 74
Query: 283 STCGMHARNR*ARAGSSTRAVRAVCTPEVRERTQPAA 173
+R R AR SS RA A EV+ER PAA
Sbjct: 75 VVAAGRSRRRSAR--SSLRA-SASLDQEVKERASPAA 108
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 332 CHTTGSDAEGDVARSAACCFTRWGL 406
C GS+ EG R+A CCF W L
Sbjct: 10 CRGAGSEWEG--VRAAVCCFLVWKL 32
>10_07_0090 + 12772571-12772699,12773144-12773284
Length = 89
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1
Query: 280 TCGMHARNR*ARAGSSTRAVRAVCTPEVRE 191
T G+ AR R RAG RA AV T +RE
Sbjct: 51 TPGIGARRRHYRAGVGRRAPAAVATAPIRE 80
>07_03_0763 -
21331534-21331779,21331871-21332021,21332093-21332330,
21332449-21332659,21332744-21332871,21333569-21333706,
21333825-21334644
Length = 643
Score = 27.1 bits (57), Expect = 9.8
Identities = 23/97 (23%), Positives = 43/97 (44%)
Frame = -1
Query: 433 VELSGPKAS*SPTSEAAGRRSSDIALCVTASRMAP*SRRLASITCSVHISSTCGMHARNR 254
++L GP S +P AAG RS + + A M + LA+I +S +
Sbjct: 256 LQLPGPSPSPAPPVTAAGERSKNKRSAILAISMPTIALVLATIAAWFCSTSWRRRRLARK 315
Query: 253 *ARAGSSTRAVRAVCTPEVRERTQPAAREQYAQYARL 143
R SS +++ + + +T A + ++++ RL
Sbjct: 316 TLRPKSSEDEMQSFASLVLDLQTLRTATDNFSEHKRL 352
>03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160
Length = 200
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 266 VHTARAAYVHTARDAREPPTSRCHTTG 346
V TARAA + A + PP S+C+ G
Sbjct: 102 VDTARAALLPGACSVQAPPASQCNAAG 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,945
Number of Sequences: 37544
Number of extensions: 247892
Number of successful extensions: 812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -