Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0416
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46460| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.12 
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)                 30   1.4  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  29   3.3  
SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_44887| Best HMM Match : EGF (HMM E-Value=4.1e-09)                   28   5.7  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         28   5.7  
SB_22018| Best HMM Match : VKOR (HMM E-Value=5.9)                      27   7.6  
SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_46460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 28  CATAAHCSRAATCTRRRYFWRANCAYCSRAAGCARSPASDVHTVRTARV 174
           C ++ HC R  +  RRR   R     C R+  C RS A  +   R   V
Sbjct: 36  CPSSNHCRRCRSIARRRSVARRRSIACHRSVACCRSVARRLFIARRRSV 84


>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
          Length = 1065

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 28  CATAAHCSRAATCTRRRYFWRANC-AYCSRAAGCARS 135
           C  AA C R  TCT  +  W  +C A C+R +    S
Sbjct: 377 CTRAAKCDRELTCTCNKK-WEGSCNAICTRTSNATSS 412


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 389 SSRPQIERHRPLRHCQSYGTVKSAAREHHVQCAHKQHVRYARQK 258
           S RP+I R  P+RH  SY + ++     H+    K  +++   K
Sbjct: 88  SWRPKISREIPIRHLSSYYSSQTTTAACHLTSPRKNMLKFLTLK 131


>SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +1

Query: 19  KNDCATAAHCSRAATCT-RRRYFWRANCAYCSRAAGCAR 132
           KN   +A + +    C  +  YFW     YC+    C R
Sbjct: 107 KNQVISACNATHDTVCRCQEGYFWDTGTLYCAECKSCGR 145


>SB_44887| Best HMM Match : EGF (HMM E-Value=4.1e-09)
          Length = 193

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 46  CSRAATCTRRRYFWRANCAYCSRAAGCARSPASD 147
           C    TCT+R   +  +CA     A C ++ +SD
Sbjct: 60  CQHGGTCTKRFNGYECSCAPTYTGANCEKALSSD 93


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 46   CSRAATCTRRRYFWRANCAYCSRAAGCARSPASD 147
            C    TCT+R   +  +CA     A C ++ +SD
Sbjct: 1158 CQHGGTCTKRFNGYECSCAPTYTGANCEKALSSD 1191


>SB_22018| Best HMM Match : VKOR (HMM E-Value=5.9)
          Length = 433

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 192 SLTSGVQTARTARVL--LPARAHLFLACIPHVLLMCTLHVMLASRRL 326
           SLT     AR AR++      + LFL    H  + C LH+   S R+
Sbjct: 284 SLTGVTMVARVARLMCIFMTGSDLFLHTTVHRYMSCLLHIYTQSHRI 330


>SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 10  HEVKNDCATAAHCSRAATCTRRRYFWRANC--AYCSRAAGCARSP 138
           H  +++ A  A  + ++T   +R + R +   A  S AAGCARSP
Sbjct: 475 HSSRDEFADIAEGAGSSTAVSQRAYSRCHIMIAEPSAAAGCARSP 519


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,891,020
Number of Sequences: 59808
Number of extensions: 276732
Number of successful extensions: 840
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)