Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0416
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    30   0.018
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.2  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 0.018
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 371 ERHRPLRHCQ-SYGTVKSAAREHHVQCAHKQHVRYARQK*MSARRQQ 234
           + H    H Q   G  +S A++ H+Q AH+QH+ Y +Q+   A  QQ
Sbjct: 171 QMHTQHPHMQPQQGQHQSQAQQQHLQ-AHEQHMMYQQQQQSQAASQQ 216


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 316 LASITCSVHISSTCG 272
           L  IT  VHI  TCG
Sbjct: 12  LPGITIGVHILDTCG 26


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 316 LASITCSVHISSTCG 272
           L  IT  VHI  TCG
Sbjct: 102 LPGITIGVHILDTCG 116


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 514  IILKMQAEPISSSAGLQTNYSLLVTP 437
            I +   + P+S++ G+ T Y ++V P
Sbjct: 1098 IRISWMSPPLSAANGVITGYKVIVIP 1123


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 229 RAVRAVCTPEVRERTQPAAR 170
           R + A C   VR R QPA R
Sbjct: 403 RILCACCPGRVRRRYQPAFR 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,479
Number of Sequences: 438
Number of extensions: 1877
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)