Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0415
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0081 - 622811-623551                                             32   0.42 
11_04_0255 - 15422536-15422640,15422734-15422790,15422917-154230...    30   1.7  
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004     27   9.0  

>11_01_0081 - 622811-623551
          Length = 246

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 361 EIVSLTRTCTDFSGTFPCKKNISPVKYMNMYIH 263
           E+++ T +C DF G  PC  ++ P  + N Y+H
Sbjct: 24  EVLNYTSSCKDFRGRTPCWSSLQPPPFAN-YMH 55


>11_04_0255 -
           15422536-15422640,15422734-15422790,15422917-15423013,
           15423155-15423222,15423299-15423344,15423467-15423621,
           15423767-15423995,15424124-15424200,15425804-15425856,
           15426082-15426139
          Length = 314

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
 Frame = +3

Query: 183 LNFHSSHNSKFKKDSKIQPVIF*ICKVCMYMFIYF------TGLMFFLQGKVPEKSVHVR 344
           LN   +   +F+   ++  V F +C +C+Y+++        TG++++   ++PE S+H+ 
Sbjct: 183 LNTKYTMFKRFQGTMQVALVAFIMCHLCLYVYMTVDGTPDNTGVVYWWNFRIPEASLHLP 242

Query: 345 V 347
           V
Sbjct: 243 V 243


>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
          Length = 578

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 154 LIEYAISKRAHVTYFVKYVFSYTCTSEAYLHPFYNNF 44
           L+  A+     VTY +K VF +      Y HP   NF
Sbjct: 243 LLALAVLVAVSVTYALKCVFYFEAIRREYFHPVRVNF 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,081,370
Number of Sequences: 37544
Number of extensions: 254069
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)