Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0415
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15719| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_39580| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_15719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 615 SPAAIFRLANDYYVGRIVMSDLVGNFILLIL 523
           SP  +F L + YY GR     LV N+I+L+L
Sbjct: 290 SPLFLFYLVDAYYPGRNRKVSLVANYIILVL 320


>SB_39580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 302 KHKSCKIYEHVHTYFTYLKYNWLN 231
           K+   +I  H+H  FT ++ NW N
Sbjct: 49  KYSCARILAHLHVLFTRVRRNWTN 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,614,861
Number of Sequences: 59808
Number of extensions: 343726
Number of successful extensions: 699
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)