Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0415
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    35   0.040
Z82287-1|CAB05316.1|  366|Caenorhabditis elegans Hypothetical pr...    33   0.12 
Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 130 RAHVTYFVKYVFSYTCTSEAYLHPFYNNFSNFQLLINLVP 11
           RA VT  V  +F+Y C   A  H F N F ++ L++++ P
Sbjct: 64  RAAVTTSVGLIFTYFCYGNAIAHLFINGFGSYLLMVSVPP 103


>Z82287-1|CAB05316.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK550.1 protein.
          Length = 366

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 130 RAHVTYFVKYVFSYTCTSEAYLHPFYNNFSNFQLLINLVP 11
           RA VT  + ++F Y C      H F N F ++ L+I+++P
Sbjct: 64  RAAVTTPIGFIFLYFCYGNEIAHFFINGFGSYLLMISVLP 103


>Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.2 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 211 NLKKILKF-NQLYFKYVKYVCTCSYILQDL 297
           N+  +L   NQ Y   +KYVC C Y   D+
Sbjct: 291 NIMSVLNVANQTYDNIIKYVCLCQYYHSDM 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,519,149
Number of Sequences: 27780
Number of extensions: 277405
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)