Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0415
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.59 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.59 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 93  HIHVLLRLTYTHFIIISVIFNC 28
           H H+ L + Y+  +I+S++ NC
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNC 76


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 93  HIHVLLRLTYTHFIIISVIFNC 28
           H H+ L + Y+  +I+S++ NC
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNC 76


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 315 KVPEKSVHVRVSETISFMDIVLK 383
           KVP   V   +S   SFM++ L+
Sbjct: 821 KVPSTKVLAMISSVKSFMELSLR 843


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 357 SFHSHEHVPTSREP 316
           S+H H+H P+   P
Sbjct: 315 SYHPHQHHPSQYHP 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,969
Number of Sequences: 438
Number of extensions: 3382
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)