Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0414
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 28 0.82
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 27 2.5
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 3.3
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 26 4.4
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 26 4.4
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 7.6
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 7.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 7.6
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 7.6
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 28.3 bits (60), Expect = 0.82
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 299 CLIIGFFPYQSSCGDLSELV 358
CL+ GFF Y ++ GD+S+ V
Sbjct: 417 CLLFGFFAYINAAGDVSDTV 436
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 255 QKRRKFDKKA-IKGRLIGYDEDCYRIWITDGKHSTLVR 145
+K KF + I +GY ++C R W +H+ VR
Sbjct: 608 KKEAKFSEFIPIVAEKLGYPQECMRFWYVVKRHNCTVR 645
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 3.3
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 26 F*VRIWRYGNRV--FSCLNVRVLGISLLQIG--RGFSSKITSRERTSVECF 166
F +R + G+ V F C++ VL SLL +G +GFSS T+ T CF
Sbjct: 121 FFIRFGKLGHCVYLFYCISTNVLVSSLLLLGGSQGFSS--TTGMNTVAACF 169
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 4.4
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = -2
Query: 471 VSVTEIARSMMYAHEPLPQVLWAELINTAAYILNRTGPTSSDKSPHELW-----YGKKPI 307
+S+T IA +++ ++ + + + A+ +TG S D + +W YG I
Sbjct: 28 ISLTIIASILLFTGGTTTKIKYIDALFLASSATTQTGLNSVDLNSLSIWQQFILYGFTAI 87
Query: 306 IKHLRIIGSIAYVHIPKQKRRKF 238
+ + GSI+++ + RRKF
Sbjct: 88 TVPIWMHGSISFIRL-YWFRRKF 109
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -2
Query: 357 TSSDKSPHELWYGKKPIIKHLRIIGSIAYVHIPKQKRRKFDKK 229
+S+++ PH L YG K R++ + ++ P ++ K D++
Sbjct: 29 SSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPGSEKLKIDQR 71
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 517 NSTATRHPVYT*TKRSKRNGDSKIN 443
N + PVYT K+S R+G S I+
Sbjct: 344 NGEKKQKPVYTNKKKSNRSGTSSIS 368
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 7.6
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = -2
Query: 306 IKHLRIIGS--IAYVHIPKQKRRKFDKKAIKGRLIGYDEDCYRI-WITDGKHSTLVRSRD 136
I+ +R++ S IA++ + +F K+A+ + + +DE C + W T +
Sbjct: 201 IERIRVLNSRGIAFITYLNEANAQFAKEAMAHQSLDHDE-CLNVRWATTDPNPASQARNQ 259
Query: 135 VIFDEKPLPICNSEIPKTRTLRQENTR 55
+E+ +PK L E T+
Sbjct: 260 RRLEERAANAVKKLLPKQFLLDLEETK 286
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 53 NRVFSCLNVRVLGISLLQIGRGFSSKITSR 142
N +FS L VLGIS+L R S++ R
Sbjct: 765 NTIFSVLRSFVLGISILTPWRNIFSRMPQR 794
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -2
Query: 285 GSIAYVHIPKQKRRK--FDKKAIKGRLIGY 202
G++ ++ KQK++K D KA KGR I Y
Sbjct: 356 GTVRWMATKKQKQKKENVDTKASKGRKIRY 385
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 177 ITDGKHSTLVRSRDVIFDEKPLPICNSEIPKTRTL 73
+ + +STL +S + FDE+P N + +T+
Sbjct: 463 VDEASNSTLTKSGNSYFDEEPFVYINPDDTSIKTI 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,489
Number of Sequences: 5004
Number of extensions: 52775
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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