Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0414
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   6.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 475 VLFRCIRGDESLCY 516
           VL R +RG E  CY
Sbjct: 376 VLMRTVRGKEKTCY 389


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 475 VLFRCIRGDESLCY 516
           VL R +RG E  CY
Sbjct: 376 VLMRTVRGKEKTCY 389


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 348 LNLWDLFCSVCM 383
           +NLW  FCS C+
Sbjct: 354 VNLWSGFCSQCI 365


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 393 NTAAYILNRTGPTSS 349
           N   Y+ N+TGP SS
Sbjct: 383 NVDQYLYNQTGPLSS 397


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 358 GTCSVQYVCGGINELCP*HLR*WLMSVHH*SCYLRYAYSVLF 483
           G C  + +  G     P H+   L+S H+ S    YA+ +LF
Sbjct: 742 GFCITEVMMLGSIVGTPVHMAPELLSGHYDSSVDVYAFGILF 783


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 358 GTCSVQYVCGGINELCP*HLR*WLMSVHH*SCYLRYAYSVLF 483
           G C  + +  G     P H+   L+S H+ S    YA+ +LF
Sbjct: 780 GFCITEVMMLGSIVGTPVHMAPELLSGHYDSSVDVYAFGILF 821


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 456 IARSMMYAHEP-LPQVLWAELINTAAYILNRTGPTSSDKSPHELWY 322
           +A   +YA +P   +VL   +I+    ++    PT  DK+P +LWY
Sbjct: 557 VANRYVYASQPDKDRVL---VISEIQMVIVDVIPT--DKNPVQLWY 597


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,103
Number of Sequences: 438
Number of extensions: 3583
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)