Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0414
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19025.1 68414.m02368 DNA cross-link repair protein-related c...    30   1.2  
At1g05700.1 68414.m00591 leucine-rich repeat protein kinase, put...    28   4.9  
At1g50560.1 68414.m05673 cytochrome P450, putative similar to CY...    27   6.5  
At4g10060.1 68417.m01645 expressed protein contains Pfam domain ...    27   8.6  
At4g01890.1 68417.m00247 glycoside hydrolase family 28 protein /...    27   8.6  

>At1g19025.1 68414.m02368 DNA cross-link repair protein-related
           contains weak similarity to Swiss-Prot:P30620 DNA
           cross-LINK repair protein PSO2/SNM1 [Saccharomyces
           cerevisiae]
          Length = 549

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 38  IWRYGNRVFSCLNVRVLGIS--LLQIGRGFSSKITSRERTSVECFPSVIQI 184
           IW + +     L   +LG    LL++ R F SKI   + T++ECF S++ I
Sbjct: 182 IWNHPDAPVVYLACDMLGQEDVLLEVSRTFGSKIYVDKATNLECFRSLMVI 232


>At1g05700.1 68414.m00591 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase, gi|2129635; contains leucine rich repeat (LRR)
           domains, Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 843

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 246 RKFDKKAIKGRLIGYDEDCY-RIWI 175
           R++D +++ G  + YD+D Y RIWI
Sbjct: 196 RRWDLRSLMGSPVRYDDDVYDRIWI 220


>At1g50560.1 68414.m05673 cytochrome P450, putative similar to
           CYTOCHROME P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max]
          Length = 519

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 321 GKKPIIKHLRIIGSIAYVHIPKQKRRKFDKKAIKGRLIG 205
           G+ PI++   + GS  +V +P     +F KK +  +L+G
Sbjct: 114 GQTPIMEKSLLFGSFGFVSVPYGDYWRFMKKLLVKKLLG 152


>At4g10060.1 68417.m01645 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 912

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 483 EQNGVSVTEIARSMMYAHEPLPQVLWAELINT 388
           E+NG + +E+ ++ M  +E LPQV W   +N+
Sbjct: 2   EKNGHTESEL-QTQMVGNERLPQVTWQRKLNS 32


>At4g01890.1 68417.m00247 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:7381227;
           contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 468

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 461 VTLTPFCSGVYGVTSRCAIPCVS 529
           + + PFC   YG+T   ++P +S
Sbjct: 425 IVVGPFCWNAYGITDEFSVPLIS 447


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,654,554
Number of Sequences: 28952
Number of extensions: 268755
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)