Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0410
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 272 2e-74
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 233 1e-62
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 157 1e-39
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 134 7e-33
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 119 4e-28
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 107 1e-24
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 106 2e-24
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 104 9e-24
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 103 2e-23
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 100 3e-22
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 98 8e-22
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 98 8e-22
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 96 3e-21
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 93 3e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 90 2e-19
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 88 1e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 85 6e-18
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 79 4e-16
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 75 8e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 73 2e-14
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 66 3e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 61 1e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 60 2e-10
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 44 2e-05
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 34 0.014
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.30
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.40
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.2
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.1
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 3.7
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 26 4.9
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 4.9
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 4.9
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 6.5
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 6.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 6.5
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 272 bits (668), Expect = 2e-74
Identities = 125/170 (73%), Positives = 154/170 (90%)
Frame = +2
Query: 95 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 274
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 275 SGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 454
SGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGG
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
Query: 455 TNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 604
T VR+D+ L++GVHVVVGTPGRV+DMI RRAL + +++FVLDEADEML
Sbjct: 125 TLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEML 174
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 233 bits (570), Expect = 1e-62
Identities = 113/171 (66%), Positives = 136/171 (79%), Gaps = 1/171 (0%)
Frame = +2
Query: 95 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 271
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 272 QSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 451
QSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIG
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIG 125
Query: 452 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 604
GT+V DI++L+ G HVV GTPGRV DMI RR L +K+ +LDEADE+L
Sbjct: 126 GTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELL 176
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 157 bits (381), Expect = 1e-39
Identities = 82/190 (43%), Positives = 115/190 (60%), Gaps = 4/190 (2%)
Frame = +2
Query: 47 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 214
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 215 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQ 394
IQ+ +I + GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTS 129
Query: 395 KVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKL 574
+V LG H+N K GGT +R+DI +L VH+VVGTPGRV D+ + +
Sbjct: 130 QVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTT 189
Query: 575 FVLDEADEML 604
FV+DEAD++L
Sbjct: 190 FVMDEADKLL 199
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 134 bits (325), Expect = 7e-33
Identities = 69/160 (43%), Positives = 108/160 (67%), Gaps = 3/160 (1%)
Frame = +2
Query: 134 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSI 307
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 308 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI-RQL 484
++L ++D S+ + QA+ LAP+RELA+QI VV +G + K +++ + +
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT-----AFGIKDSVPKGA 227
Query: 485 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 604
+ +V+GTPG V D++ RR L A IK+FVLDEAD ML
Sbjct: 228 KIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNML 267
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 119 bits (286), Expect = 4e-28
Identities = 67/158 (42%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 322
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 323 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI---RQLES 490
I+ E L+L TRELA QI+ +L + + GG N+++D+ +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 491 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 604
H+VV TPGR+ ++ + L N++K FVLDE D++L
Sbjct: 173 SPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLL 210
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 107 bits (257), Expect = 1e-24
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 4/202 (1%)
Frame = +2
Query: 8 ASERRSEDWPEDSKNGPSKDQGSYDGPPGMDPG--TLDTDWDQVVETFDDMNLKEELLRG 181
A++ + + +N +D G+Y ++ T + F M L + LLR
Sbjct: 24 ATDNQKDKHENVGENVSDEDDGNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLRA 83
Query: 182 IYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQAL 355
I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++ + +++ +AL
Sbjct: 84 IFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRAL 143
Query: 356 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDM 535
IL+P RELA Q KVV + + A +GG ++ E L +VV TPGR +
Sbjct: 144 ILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHL 203
Query: 536 ITRRALHANTIKLFVLDEADEM 601
L ++I+ V DEAD +
Sbjct: 204 KVEMKLELSSIEYVVFDEADRL 225
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 106 bits (255), Expect = 2e-24
Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Frame = +2
Query: 113 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 292
D+ ++ +TF ++ + +EL GF+ P+ IQQ AI + RDVI AQ+G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 293 ATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 472
A F++ ++Q++ + A++LAPTRELA QI + A+G + + +GG ++
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQ 157
Query: 473 IRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEML 604
L HV+V TPGR+ D + + +K ++DEAD +L
Sbjct: 158 AVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLL 202
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 104 bits (250), Expect = 9e-24
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Frame = +2
Query: 140 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 319
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 320 QI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 490
++ + + LIL PTRELA Q V + + CIGG +++ ++L
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 491 GVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEML 604
+V+ TPGR D M + I++ V+DEAD ML
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRML 418
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 103 bits (247), Expect = 2e-23
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Frame = +2
Query: 119 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 298
D + +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 299 FSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 454
F I ++ I + E A++LAPTRELAQQIQ + L +C + +GG
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
Query: 455 TNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 604
E Q+ G H+VV TPGR+ D + RR + V+DEAD ML
Sbjct: 363 HAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRML 412
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 99.5 bits (237), Expect = 3e-22
Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 4/160 (2%)
Frame = +2
Query: 137 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 316
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 317 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 496
++ ALIL PTRELA QI + ALG +LN K +GG ++ L
Sbjct: 67 EKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRP 126
Query: 497 HVVVGTPGRVYDMITRRALHA----NTIKLFVLDEADEML 604
HVVV TPGR+ D+I IK V+DEAD +L
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLL 166
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 98.3 bits (234), Expect = 8e-22
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Frame = +2
Query: 137 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 316
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 317 Q------QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 478
+ QID + R AL+L PTRELAQQ+ V+ L + TN + ++
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQ 133
Query: 479 Q--LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 604
+ L +V+ TP R + L + +K V+DEAD ML
Sbjct: 134 RPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLML 177
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 98.3 bits (234), Expect = 8e-22
Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Frame = +2
Query: 134 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 313
V + +L E+L + GF KP IQ I G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 314 LQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 487
L+ + + QAL++APTRELA QI + + N + + GG V++ R L
Sbjct: 181 LEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 488 SGVHVVVGTPGRVYDMITRRALHAN--TIKLFVLDEADEML 604
HVVV TPGR++ +I L N IK VLDEAD +L
Sbjct: 241 KHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLL 281
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 96.3 bits (229), Expect = 3e-21
Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 5/162 (3%)
Frame = +2
Query: 134 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---S 304
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++G+GKT F +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 305 ISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 481
I +L + R +I++PTRELA QI V L + + IGG N R + +
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADK 207
Query: 482 LESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEML 604
L GV+++V TPGR+ D + + ++ V+DEAD +L
Sbjct: 208 LVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRIL 249
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 93.1 bits (221), Expect = 3e-20
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Frame = +2
Query: 134 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 313
V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 314 LQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 478
+ I+ L+LAPTRELA QIQ+ G + GG IR
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 479 QLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 604
L GV + + TPGR+ DM+ + + VLDEAD ML
Sbjct: 241 DLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRML 282
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 90.2 bits (214), Expect = 2e-19
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Frame = +2
Query: 119 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 298
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 299 FSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 463
F + + + I ++ + A+I+ PTRELA QI + LN + GG +
Sbjct: 472 FLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPI 531
Query: 464 REDIRQLESGVHVVVGTPGRVYDMITR---RALHANTIKLFVLDEADEM 601
++ I L+ G +VV TPGR+ D+++ R + + VLDEAD M
Sbjct: 532 KDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRM 580
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 87.8 bits (208), Expect = 1e-18
Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Frame = +2
Query: 134 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 313
V F L LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 314 L--------------QQIDTSIRECQA----LILAPTRELAQQIQKVVIALGDHLNAKCH 439
L Q R +A LILAPTREL QI + +
Sbjct: 228 LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPC 287
Query: 440 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 604
A GG ++R IRQ++ G ++ TPGR+ D+I R + IK VLDEAD ML
Sbjct: 288 AVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRML 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 85.4 bits (202), Expect = 6e-18
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 322
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 323 ID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 493
++ + + L+++PTRELA Q + + +L N K GG E R ++
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNA 286
Query: 494 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 604
V++GTPGR+ D+I ++ + + VLDEAD ML
Sbjct: 287 -SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRML 322
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 79.4 bits (187), Expect = 4e-16
Identities = 47/164 (28%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Frame = +2
Query: 128 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 307
+ V+ F ++ L + + F + IQ++ I ++GRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 308 SILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 475
+++ + TS+ AL+++PTRELA Q + ++ +G + IGG N +E+
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEK 155
Query: 476 RQLESGVHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEML 604
+L S ++++V TPGR+ I + + +++ +LDEAD +L
Sbjct: 156 ERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRIL 198
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 74.9 bits (176), Expect = 8e-15
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 13/168 (7%)
Frame = +2
Query: 140 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 319
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 320 QI---DTSIRECQALILAPTRELAQQIQKVVIAL----------GDHLNAKCHACIGGTN 460
++ DT ALI+APTRELA QI V L G L A + GT
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 461 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 604
+ E VV+GTPGR+ +M++ + + +++ +LDEAD ++
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLI 167
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 73.3 bits (172), Expect = 2e-14
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Frame = +2
Query: 206 PSAIQQRAIMPCIQ--GRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 358
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 359 LAPTRELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 526
+APTREL QQI V L + H C+ IGG + + ++ GV++++GTPGR+
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRL 280
Query: 527 YDMI-TRRALHANTIKLFVLDEADEML 604
D + AL + ++ VLDE D ++
Sbjct: 281 ADHLENTEALDVSQVRWVVLDEGDRLM 307
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 66.5 bits (155), Expect = 3e-12
Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
Frame = +2
Query: 194 GFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 355
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 356 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGG-TNVREDIRQLESGVHVVVGTPGRVYD 532
IL+PTRELA QI + L + IGG + +RE+ ++++ TPGR+ D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 533 MITR-RALHANTIKLFVLDEADEML 604
+ R L + + F+LDEAD ++
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLM 201
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 61.3 bits (142), Expect = 1e-10
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Frame = +2
Query: 164 EELLRGIYAYGFEKPSAIQ----QRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQQID 328
EE GI +K + + QR +P I RD++A A +G+GKT + ILQ++
Sbjct: 50 EEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ 109
Query: 329 TSI-RECQALILAPTRELAQQIQKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGVHV 502
+ +A+I+APTREL +QI + L + K ++E +L +
Sbjct: 110 LHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDM 169
Query: 503 VVGTPGRVYDMITRRALHANTIKLFVLDEADEM 601
+GTP R+ I + L ++ FV+DEAD +
Sbjct: 170 CIGTPMRLVQAI-QTGLSFEKVEFFVMDEADRL 201
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 60.1 bits (139), Expect = 2e-10
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Frame = +2
Query: 161 KEELLRGIYAYGFEKPSAIQQRAIMPCIQ-GRDVIAQAQSGTGKTATFSISILQQID-TS 334
K+ + RG P +Q P G DV A +G+GKT ++ I I+Q + +
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 335 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL-----ESGVH 499
+ + +++ PTREL Q+ K + A G ++R + QL E +
Sbjct: 203 VPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRID 262
Query: 500 VVVGTPGRVYDMITR-RALHANTIKLFVLDEADEML 604
V+V TPGR+ D I + ++ V+DEAD +L
Sbjct: 263 VLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLL 298
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 44.0 bits (99), Expect = 2e-05
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 9/154 (5%)
Frame = +2
Query: 158 LKEELLRGIY-AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 334
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 335 IRECQALILAPTRELAQQIQKVVIALGDHL----NAKCHACIGGTNVREDIRQLESGVHV 502
+ A + PT+ LAQ +K +I + ++ N + G T + E + ++
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPL-ESRESIIRSANI 412
Query: 503 VVGTPGRVYDMITRRA----LHANTIKLFVLDEA 592
+ P ++ I A +KLFVLDEA
Sbjct: 413 IFTNPDMLHQTILPNANRWYYFFKNLKLFVLDEA 446
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 34.3 bits (75), Expect = 0.014
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Frame = +2
Query: 221 QRAIMPCIQGRD--VIAQAQSGTGKTATFSISILQQIDTSIRE--------CQALILAPT 370
Q + P G D ++ A +G GKT + IL ++ +RE + + +AP
Sbjct: 524 QSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPL 583
Query: 371 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA 550
+ L Q++ N + G + + +Q S ++V TP + +D+ITR+A
Sbjct: 584 KALVQEMVNNFSKRLTPYNIRVAELTGDSQL---TKQQISETQIIVTTPEK-WDIITRKA 639
Query: 551 ---LHANTIKLFVLDE 589
+ N ++L ++DE
Sbjct: 640 NDLSYVNLVRLVIIDE 655
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.30
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 434 CHACIGGTNVREDIRQLE-SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 601
C I G N R + +L S + ++ + + R + A+T K+ +LDEAD M
Sbjct: 76 CARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAM 132
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.40
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 110 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 256
LDT+W V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 107 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 199
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 278 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 394
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 310 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 411
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 389 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT-PGRVYDMITRRALHANT 565
++ + A+ DHL+ + CIG N+ ED VH + T G+ ++T H++
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED------SVHKISLTRSGKPSQLVTVSCRHSSV 187
Query: 566 IK 571
I+
Sbjct: 188 IQ 189
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 84 DLREWTLGHLTPT 122
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 424 QVITKSYHHLLNLLGQLSCGSQDQ 353
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +2
Query: 356 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 514
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 484 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 383
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 104 QGPFPEVHRNYLDPSMAHFWNPLANL 27
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 95 FPEVHRNYLDPSMAHFWNPLANLLTFFQTPA 3
+P V+++ PS++ PL L T FQ+PA
Sbjct: 252 YPLVYQSDFVPSVSENCTPLELLKTVFQSPA 282
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 6.5
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 323 IDTSIRECQALILAPTR-ELAQQIQKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGV 496
+D IR+ A+ +P +LA + + D H +++ D+R +ESGV
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGV 404
Query: 497 HVVVGTPGRVYDMITR--RALHANTIKLFVLDEADEM 601
+ + T G YD + L+ + IK V E M
Sbjct: 405 NRFIATSG--YDGCVKLWNPLNCSLIKSMVGHEEKVM 439
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 113 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR 253
DTDWD +V + D++L+ RGI A G + + + P + +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSK 660
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,449
Number of Sequences: 5004
Number of extensions: 62242
Number of successful extensions: 238
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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