Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0409
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   101   6e-23
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    29   0.42 
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   2.2  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    27   2.2  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   2.9  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.1  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   6.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.0  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   9.0  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    25   9.0  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   9.0  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  101 bits (242), Expect = 6e-23
 Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
 Frame = -3

Query: 515 YMAAKKHLEINPDHSIVETLRQKAEAD-KNDKAVKDLVILLYETALLSSGFTLDEPQVHA 339
           YM+++K  EINP   I+  L++K E +   D++VKDL  +LYETALLSSGFTLD+P  +A
Sbjct: 602 YMSSRKTFEINPKSPIIAELKKKVEENGAEDRSVKDLATILYETALLSSGFTLDDPSAYA 661

Query: 338 SRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD 201
            RI R+I LGL IDE+E   +EE ++  V   E +A+  S+MEEVD
Sbjct: 662 QRINRLISLGLSIDEEEEAPIEEISTESV-AAENNAE--SKMEEVD 704


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 284 IQVEEPASGDVPPLEGDADDASRMEEVD 201
           IQ + P   D PP++ DAD+    EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/82 (19%), Positives = 39/82 (47%)
 Frame = -3

Query: 452 QKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVE 273
           Q AE +   +   ++ +L+     + + + +D   ++   + ++      I ED+  +VE
Sbjct: 22  QDAEENSQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESLRKLTNAQNTIIEDKKRKVE 81

Query: 272 EPASGDVPPLEGDADDASRMEE 207
           +P SG+   L  + D+  + E+
Sbjct: 82  KPVSGNQFSLLSEEDEVDKKEK 103


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 240 LQWRHISRSRLFNLNRLIFINTKTQFDHSIDTGSMDL 350
           L+W  I RS   N+N    ++   Q  HS+DT S+D+
Sbjct: 272 LEWS-IQRSNDSNINCSTCLDVDCQHLHSLDTHSLDI 307


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 464  ETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDE 294
            E+ R+K E+DKN ++ K +     E+     G + D   V   R+YR    G+ +D+
Sbjct: 1281 ESNRRKLESDKNVQSNKYVNPFASESEFCRCGASADPYTVLFWRLYRNKPSGIKLDK 1337


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 415 RILLSYCMKLPCCLLASRLMSPKSML---PVSIE*SNWVLVLMKMSRFRLKSL 266
           +IL+ +    PC    +RL  PK +L    VS++       L ++SR  L S+
Sbjct: 83  KILIKWIRTTPCFSYCARLKEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHSV 135


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 198 LINLLHARCIIGITLQWRHISRSRLFNLNRLIF 296
           LI  LH R ++G++L+  H+S    F L   IF
Sbjct: 632 LILQLHLRRVLGLSLKLYHLSILYFFELISSIF 664


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 448  KRKPTRMTKLLRILLSYCMKLPCCLLASRLMSPKSML 338
            K  P+ +T   RILLSY M LP C +  +L+  ++ L
Sbjct: 972  KTIPSVLTAQTRILLSY-MLLPECDIDVQLLKKRNSL 1007


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 452 QKAEADKNDKAVKDLVILLYETALLS-SGFTLDEPQVHASRIYRMIKLGLGI 300
           Q ++ D ND+  +DLV  ++  A+   S    + PQ+    I  +++ G+GI
Sbjct: 473 QMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQI--EHILPLLRRGIGI 522


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -3

Query: 362 LDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD*DLYFN 183
           +DE +   ++ Y ++K   G  +++ +      + D   + GDA+    M  +D +LY  
Sbjct: 477 IDEVEFDETKFYDLLKGKDGKYQNQDVDEFSSGNEDEMDIPGDANMEEYMRAMDEELYGG 536

Query: 182 CR 177
            R
Sbjct: 537 LR 538


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 515 YMAAKKHLEINPDHSIVETLRQK 447
           ++A KK LE+N    IV TLRQ+
Sbjct: 135 FIAQKKALEMNIMPKIVNTLRQE 157


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 364 VKPEDSRAVSYNKITR 411
           VK EDSR   YN +TR
Sbjct: 39  VKTEDSRVYYYNSVTR 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,617
Number of Sequences: 5004
Number of extensions: 34876
Number of successful extensions: 91
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)