Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0409
(520 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 75 3e-14
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 34 0.081
SB_48594| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26) 30 1.00
SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12) 29 1.7
SB_38135| Best HMM Match : S-antigen (HMM E-Value=0.95) 29 3.0
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_30314| Best HMM Match : CBS (HMM E-Value=2.1) 27 7.0
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_56042| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022) 27 9.3
SB_5021| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 75.4 bits (177), Expect = 3e-14
Identities = 34/82 (41%), Positives = 54/82 (65%)
Frame = -3
Query: 515 YMAAKKHLEINPDHSIVETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHAS 336
Y KK LE+NP H +V+ L ++ E +K+D+ KDL +L+ETA L SG+ + + A
Sbjct: 663 YATQKKTLEVNPRHPLVKQLLKRVEENKDDQTAKDLSRILFETATLRSGYLVKDSADFAG 722
Query: 335 RIYRMIKLGLGIDEDEPIQVEE 270
RI RM++L +G+D +E ++ EE
Sbjct: 723 RIERMLRLSMGVDLEEKVEPEE 744
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 33.9 bits (74), Expect = 0.081
Identities = 16/21 (76%), Positives = 18/21 (85%), Gaps = 2/21 (9%)
Frame = -3
Query: 257 DVPPLEGDA--DDASRMEEVD 201
D+PPLEGD DDAS+MEEVD
Sbjct: 561 DMPPLEGDDANDDASKMEEVD 581
>SB_48594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 439
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 305 GIDEDEPIQVEEPASGDV-PPLEGDADDAS 219
GIDED P V++ ASGD GD DDA+
Sbjct: 54 GIDEDAPGVVDDAASGDTEDAAPGDMDDAA 83
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 305 GIDEDEPIQVEEPASGDV-PPLEGDADDAS 219
GIDED P V++ ASGD GD DDA+
Sbjct: 358 GIDEDAPGVVDDAASGDTEDAAPGDMDDAA 387
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 302 IDEDEPIQVEEPASGDVPPLE-GDADDAS 219
IDED P V++ ASGD GD DDA+
Sbjct: 111 IDEDAPGVVDDAASGDTDDAALGDTDDAA 139
>SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)
Length = 611
Score = 30.3 bits (65), Expect = 1.00
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -1
Query: 478 ITRLWKH*GRKRKPTRMTKLLRILLSYCM-KLPCCLLASRLMSPKSMLPVSIE*SNWVLV 302
+TRL K+ G + TR ++LL YC+ K+P L +++ P++ +P S S +LV
Sbjct: 531 LTRLCKNTGLDTQATR-SRLLFSSTIYCLPKIPFPFLGNKIPCPETQIPFSALESRKILV 589
>SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)
Length = 709
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 362 LDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD 201
L E QVH + + G + +DE + ++ GD +G+ +DA +EVD
Sbjct: 437 LQEKQVHVQNLKTLRDAGHEVSDDEDEEGDDHEEGDEEDDDGEEEDA--QDEVD 488
>SB_38135| Best HMM Match : S-antigen (HMM E-Value=0.95)
Length = 770
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 299 DEDEPIQVEEPASGDVPPLEGDADDASRMEE 207
D+D+ +E A+GD PP EG + SR EE
Sbjct: 519 DDDDDEYPDEGANGDRPPEEGYYGNESRPEE 549
>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 479 DHSIVETLRQKAEADKNDKAVKDL 408
D+ + T R +++A+KND A+KDL
Sbjct: 1463 DNIVSSTPRPRSQAEKNDDAIKDL 1486
>SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 513
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 299 DEDEPIQVEEPASGDVPPLEGDADDASRMEEVD*DLYFNC 180
D+D I ++ D +GD DD +E D D Y+ C
Sbjct: 465 DDDNDISDDDDDDDDDDDDDGDDDDEDDDDEDDDDYYYTC 504
>SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)
Length = 869
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 105 NGIFELNQSLAVHRCTKTNHYDMVPTVKVEILINLLHA-RCIIGITLQWRHISRSRLFNL 281
NG+ +N L+++R N ++ ++ + INLL + ++ I R +S SRL ++
Sbjct: 348 NGLLSINCLLSINRLLSIN---LLLSINRLLSINLLLSINRLLSIN---RLLSISRLLSI 401
Query: 282 NRLIFIN 302
NRL+ IN
Sbjct: 402 NRLLSIN 408
Score = 27.1 bits (57), Expect = 9.3
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 105 NGIFELNQSLAVHRCTKTN---HYDMVPTVKVEILIN-LLHARCIIGITLQWRHISRSRL 272
N + +N+ L+++ N +++ T+ + + IN LL ++ I R +S SRL
Sbjct: 693 NRLLSINRLLSINCLLSINCLLSINLLLTINLLLTINRLLSINRLLSID---RLLSISRL 749
Query: 273 FNLNRLIFINT 305
+NRL+ INT
Sbjct: 750 LTINRLLSINT 760
>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2
Query: 36 RAEFLQPGDPLV 1
R EFLQPGDPLV
Sbjct: 31 RIEFLQPGDPLV 42
>SB_56042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -3
Query: 506 AKKHLEINPDHSIVETLRQKAEADKNDKAVKD 411
AKK++++ +H +VE + + EA +N+K K+
Sbjct: 128 AKKYVQLASEHKVVEHRKDELEA-RNEKLTKE 158
>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
Length = 192
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 420 SFVILVGFRFLP*CFHNRVIRIDFQML 500
+ ++L+ F FL FHNRV++I + L
Sbjct: 109 ALIVLICFGFLAIFFHNRVVQIVYASL 135
>SB_5021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +3
Query: 252 HISRSRLFNLNRLIFINTKTQFDHSIDTGSMDL-----GLIKREARRQQGSFIQ*DNKIL 416
H+ + L N+ +++ T I S D L++R + G+ ++ N+IL
Sbjct: 53 HVGTNDLRNMEPQQIVDSITDIGRGIQANSPDTDVVISALLQRCDSHEFGAKVKETNRIL 112
Query: 417 NSFVILVGFRFLP 455
SF G+ FLP
Sbjct: 113 RSFANQNGWSFLP 125
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,936,082
Number of Sequences: 59808
Number of extensions: 274000
Number of successful extensions: 762
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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