Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0409
         (520 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   3.5  
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    23   6.2  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   6.2  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 473 SIVETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDE 354
           ++ E   + +E  K DKA + L  ++YET L  +   L+E
Sbjct: 202 TLEEEKEELSEYQKWDKARRTLEYVIYETELKETRKQLEE 241


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 272 EPASGDVPPLEGDADDA 222
           EP+ G  PP  GD  D+
Sbjct: 185 EPSRGSTPPTPGDDSDS 201


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 377 SSGFTLDEPQVHASRIYRMIKLGLGIDED 291
           SS +T+D  +VH   + +++K   GID D
Sbjct: 182 SSYYTIDNKRVHFKEVSKLLKQH-GIDLD 209


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,333
Number of Sequences: 2352
Number of extensions: 9368
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47360208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)