Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0407
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 34 0.014
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 31 0.13
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 29 0.39
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo... 28 0.91
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 28 1.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.6
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 27 2.1
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 27 2.8
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 27 2.8
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 27 2.8
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 27 2.8
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 25 6.4
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 6.4
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 25 8.5
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 34.3 bits (75), Expect = 0.014
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Frame = +3
Query: 159 TETEKAEKGKPLNRNHS*R*SREKKTCRICYDHEIICRHGKEASASWK*ETWRKGNENVR 338
T EKA K L R R +RE +C+ C ++ C + K S+ + GN +
Sbjct: 2 TSVEKASKACELCRRKKIRCNRELPSCQNCIVYQEECHYSKRLKRSYSATKKKNGNPVLE 61
Query: 339 LKLNRRLKCP*RKNGQRILR-NLDRVASRAGRPSSPRVKIKRKRKYNRSNLLNRNQRAD 512
+ P +NG +L ++ +++R + I K N S L+R +R D
Sbjct: 62 SAIPSLSPSPSIENGSAMLNSDITSLSNRIFKVEEKLDLILSLLK-NSSEPLDRTERKD 119
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 31.1 bits (67), Expect = 0.13
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +1
Query: 91 DDTRKKCLDIYEEAKERTDHMIEQKRKKLKK---ENRLIETIPEDDPEKKKHAVYVMTMK 261
DD R K Y+EA + ++I+ +R++ +K E +L E I E + E + A +
Sbjct: 752 DDERDKA---YQEAYAKAKNVIDAERERQRKEIFEQKLAEAIREAEEEAARAAEEEANRE 808
Query: 262 LFADMERKRQHLGSKRHGGKETK 330
L E +++ + + +E K
Sbjct: 809 LHEQEEAQKRAIEERTRAAREAK 831
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 29.5 bits (63), Expect = 0.39
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 76 KTLENDDTRKKCLDIYEEAKERTDHMIEQKRKKLKKENRLIETIPEDDPEKKKHAV---Y 246
K +E+ K+ ++ + KE+ + +E RK+L K L+ET E K +
Sbjct: 121 KQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITKEECEKSW 180
Query: 247 VMTMKLFADMERK 285
+ KL+ DME++
Sbjct: 181 LEQQKLYKDMEQE 193
>SPAP27G11.07c |||serine/threonine protein kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 238
Score = 28.3 bits (60), Expect = 0.91
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 85 ENDDTRKKCLDIYEEAKERTDHMIEQ 162
E D R++C DIY E KE+ +++Q
Sbjct: 3 EKPDLRQRCSDIYREIKEKKLTVVKQ 28
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = -1
Query: 503 LVSV*EV*TIVFSFSFYLYS----WTGRSSSSRRDSVEIPQNSLPIL 375
LV + E I+ FS YL S +TG ++SSRR++V I +S+ ++
Sbjct: 573 LVDIRECKKIMGYFSAYLMSIVIPFTGVTASSRRETVNILSSSISVI 619
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 243 YGMFFFLWIIFRNGFY*AVFLFQLFPFLFYHMICSFLSLFIDVQTFFSCVIIF 85
+ FFL IF Y + F F F F+ +C FLS + S I+F
Sbjct: 133 FSFLFFLSQIFI--VYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILF 183
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 3 VHPDKNMDDSERAQQAFEIVKSS 71
+HPDKN D+ +A AF+I+K +
Sbjct: 58 IHPDKNR-DNPKAADAFDILKKA 79
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 441 DWKVFQLSTRLCRDSSKFFAHSFSKDT 361
DW V L + C + ++ F+ F KDT
Sbjct: 550 DWNVSSLIPKSCNEKNQLFSLFFRKDT 576
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -3
Query: 246 IYGMFFFLWIIFR---NGFY*AVFLFQLFPF 163
++G+ FF+WII+ GF+ + LF L F
Sbjct: 23 VFGLGFFVWIIYGYSIGGFFAFLSLFHLLEF 53
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 6 HPDKNMDDSERAQQAFEIVKSSLE 77
HPDKN DD + A + F+ + + +
Sbjct: 36 HPDKNPDDPQGASEKFQKISEAYQ 59
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 124 EEAKERTDHMIEQK-RKKLKKENRLIETIPEDDPEKKK 234
+E K+R + +QK +KK K++ R+ IP ++ KK+
Sbjct: 287 KERKKRAEKKEQQKEKKKEKEKERMKAFIPPEESSKKR 324
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 492 LGGLNDCIFFFFLSLLVDWKVFQLSTRLCRDSS 394
+G LNDC FFF +WK + +DS+
Sbjct: 177 VGNLNDCAFFF------EWKTIHACPTVKKDST 203
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 6.4
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +1
Query: 67 RAWKTLENDDTRKKCLDIYEEAKERTDHM-------IEQKRKKLK-KENRLIETIPEDDP 222
R + +E + K+ + + EE K + + I+ KRK+ + +E R+ ET +DDP
Sbjct: 137 RKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEAREKRMKETF-KDDP 195
Query: 223 EKKKHAVYVMTMKL 264
E+ + + + K+
Sbjct: 196 EEDSNMAWSIIHKI 209
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 6 HPDKNMDDSERAQQAFE 56
HPD+N D ERA + F+
Sbjct: 40 HPDRNPGDEERAVKRFQ 56
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 186 FLFQLFPFLFYHMICSFLSLFIDVQTFFSCVIIF*CFPSSTSLF 55
F + F F F+ C + I + + S V+ F CF SLF
Sbjct: 74 FFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLF 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,982
Number of Sequences: 5004
Number of extensions: 46513
Number of successful extensions: 202
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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