Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0407
(599 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59583| Best HMM Match : CSE2 (HMM E-Value=5.4) 39 0.003
SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24) 33 0.13
SB_26345| Best HMM Match : DUF1531 (HMM E-Value=2.4) 32 0.31
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 31 0.94
SB_30259| Best HMM Match : Apolipoprotein (HMM E-Value=0.0059) 31 0.94
SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0) 27 1.3
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 30 1.6
SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 29 3.8
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 28 5.0
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1) 28 6.6
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0) 28 6.6
SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1) 28 6.6
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3) 28 6.6
SB_52757| Best HMM Match : BolA (HMM E-Value=4.8) 27 8.8
SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088) 27 8.8
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 27 8.8
SB_17463| Best HMM Match : Protamine_P2 (HMM E-Value=5.6) 27 8.8
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05) 27 8.8
SB_58526| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 27 8.8
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 27 8.8
>SB_59583| Best HMM Match : CSE2 (HMM E-Value=5.4)
Length = 175
Score = 39.1 bits (87), Expect = 0.003
Identities = 30/104 (28%), Positives = 52/104 (50%)
Frame = +3
Query: 168 EKAEKGKPLNRNHS*R*SREKKTCRICYDHEIICRHGKEASASWK*ETWRKGNENVRLKL 347
E+ + K L R + + R K+ RI + + ICR+ K S + K + + +R K
Sbjct: 76 ERIRRNKKLIRRNKKQICRNKR--RISRNKKQICRNKKRISRNKK--QISRNKKQIRRKQ 131
Query: 348 NRRLKCP*RKNGQRILRNLDRVASRAGRPSSPRVKIKRKRKYNR 479
R K R+N ++ILRN +++ R + +I+R +K NR
Sbjct: 132 ISRSKKRIRRNKKQILRNKKQISRNKKRIRRNKKQIRRSKKQNR 175
>SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)
Length = 283
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +1
Query: 34 SVLNXXXXXXSRAWKTLENDDTRKKCLDIYEEAKERTDHMIEQKRKKLKKENRLIETIPE 213
S +N +W T E ++ K E+ E D IE+K+KK ++E++ + P
Sbjct: 26 SCVNLDGRIDHPSWTTSEGKQSKNKDTGEKTESIELKDRKIEKKKKKRQREDKQLGEEPS 85
Query: 214 DDPEKKKHAVYVMTMK 261
+ K +V T K
Sbjct: 86 KVKKSKTEQEHVKTEK 101
>SB_26345| Best HMM Match : DUF1531 (HMM E-Value=2.4)
Length = 169
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 85 ENDDTRKKCLDIYEEAKERTDHMIEQKRKKLKKENRLIETIPEDDPE 225
+N D K+ +DI+ + K + +K+KK KK+++ +T E PE
Sbjct: 30 KNIDAMKEAIDIFSQEKSNEELPESEKKKKKKKKDKKKKTEEETVPE 76
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 315 RKGNENVRLKLNRRLKCP*RKNGQRILRNLDRVASRAGRPSSPRVKIKRKRKYNRSNLLN 494
R+ R +L RR + QR RNL + RA R R +I+R+R+ RS +
Sbjct: 1180 RRFRRKRRRRLIRRKTRRFARRVQRHKRNLQKRLRRARRRRRLRKRIRRRRRQRRSRRYH 1239
Query: 495 RNQ 503
R Q
Sbjct: 1240 RRQ 1242
>SB_30259| Best HMM Match : Apolipoprotein (HMM E-Value=0.0059)
Length = 422
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 91 DDTRKKCLDIYEEAKERTDHMIEQKRKKLK----KENRLIETIPEDDPEKKKH 237
DDTR+ + ++ +ER H+ + R+++K ++ +P+D E KH
Sbjct: 279 DDTRESVKHLPDDTRERVKHLPDDTRERVKHLPDDTRESVKDLPDDARESVKH 331
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 91 DDTRKKCLDIYEEAKERTDHMIEQKRKKLK----KENRLIETIPEDDPEKKKH 237
DDTR+ + ++ +ER H+ + R+ +K ++ +P+D E KH
Sbjct: 213 DDTREHIKHLPDDTRERVKHLPDDTRESVKDLPDDTRESVKHLPDDTRESVKH 265
>SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 384
Score = 27.5 bits (58), Expect(2) = 1.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 85 ENDDTRKKCLDIYEEAKERTDHMIEQKRKKLK 180
E DD KK + +E ++ D +++K+KKLK
Sbjct: 294 EKDDHEKKLKKMEQEMEQVFDIKVKEKKKKLK 325
Score = 21.4 bits (43), Expect(2) = 1.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 154 IEQKRKKLKKENRLIE 201
+E+KRKK +KE + E
Sbjct: 349 LEEKRKKFEKEKKEYE 364
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +1
Query: 76 KTLEND-DTRKKCLDIYEEAKERTDHMIEQKRKKLKKENRLIETIPEDDPEKKKHAVYVM 252
K EN+ + +KK EE ++ ++ E + + K++ + E EDD +KK
Sbjct: 1892 KKEENEEEEKKKKKKENEEEDDKKNNKEENEEDEKKEKKKKEENEEEDDKKKKTKKKKKK 1951
Query: 253 TMKLFADMERKRQ--HLGSKRHGGKETKT 333
+ + ER+R+ H G + + G++ KT
Sbjct: 1952 EEEEQEEDERRRKEIHNGFRDNNGRDQKT 1980
>SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +1
Query: 73 WKTLENDDTRKKCLDIYEE--AKERTDHMIEQKRKKLKKENRLIETIPED--DPEKKKHA 240
+K + T +K D +E AK+R + ++ K+ K+E R +T PE+ E K
Sbjct: 500 FKMADETTTGEKQNDSSQELTAKQRRNKKKKEAAKRKKQEQRQDDTKPENTVQEEVNKPK 559
Query: 241 VYVMTMKLFADMERKRQHLGSKRHGGKETKT 333
+ +F D RK+ K + GKE K+
Sbjct: 560 KRQIMFSVFGDY-RKKMADDLKTYSGKERKS 589
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 127 EAKERTD-HMIEQKRKKLKKENRLIETIPEDDP-EKKKHAVYVMTMKLFADMERKRQHLG 300
EAK + H++E+K + E +++E P + P +K+ V + K MER+ QHL
Sbjct: 5158 EAKPLEEKHLVEEKELPVSAE-KVVEEKPLEKPITRKEDKVEEVKPKKEKPMEREAQHLE 5216
Query: 301 SK 306
K
Sbjct: 5217 EK 5218
>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 112 LDIYEEAKERTDHMIEQKRKKLKKENRLIETIPEDDPEKKKHAVYVMTMKLFADMERKRQ 291
+DI E D ++R +L +N L I +DD E ++ K+FA R+R+
Sbjct: 720 MDIERRRTEVRDPTTHRRRPRLMADNELPRWILKDDNEVERLTWEEEEEKMFARGSRQRK 779
Query: 292 HLGSKRH 312
+ H
Sbjct: 780 KVDYSEH 786
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 75 PSSTSLFQKLVEHAQSHPYSYPDGQ 1
P + SL Q L++ A+ Y YPDGQ
Sbjct: 123 PQNRSLCQALIDGAREGYYLYPDGQ 147
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/89 (29%), Positives = 42/89 (47%)
Frame = +1
Query: 94 DTRKKCLDIYEEAKERTDHMIEQKRKKLKKENRLIETIPEDDPEKKKHAVYVMTMKLFAD 273
D ++K D E + D E+++KK+KKE I+ +D E + K
Sbjct: 206 DKKQKAKDSSESLSDSEDDR-ERRKKKVKKE---IKHKAKDSSESSIDSEDDRERK---- 257
Query: 274 MERKRQHLGSKRHGGKETKT*G*N*TGDS 360
ERK+++ K+H KET + N + DS
Sbjct: 258 -ERKKKNKKEKKHKSKETSSSESNKSSDS 285
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 76 KTLENDDTRKKCLDIYEEAKERTDHMIEQKRKKLKKENRLIETIPEDD 219
K ++ D+TR+ C D+ +E T+ + K K + E+R + E D
Sbjct: 2164 KAMKLDETRQMCSDLKQEVVSLTNELQVIKSSKRELEDRFNDLEKEHD 2211
>SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1)
Length = 633
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 456 KRKRKYNRSNLLNRNQRADNYSNRIKRFLR 545
+ RKYN+S+LL R R N S+ + R R
Sbjct: 12 RTSRKYNKSSLLTRTSRKYNTSSLLTRTSR 41
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 456 KRKRKYNRSNLLNRNQRADNYSNRIKRFLR 545
+ RKYN+S+LL R R N S+ + R R
Sbjct: 406 RTSRKYNKSSLLTRTSRKYNTSSLLTRTSR 435
>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 687
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -3
Query: 474 CIFFFFLSLLVDWKVFQLSTRLCRDSSKFFAHSFSKDT*VSCSISASRF 328
C FFFLS L K S SS S S T S S+++S F
Sbjct: 204 CALFFFLSFLCYVKCCSASASSSTASSSLSTSSSSSSTSSSSSLTSSSF 252
>SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)
Length = 279
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 456 KRKRKYNRSNLLNRNQRADNYSNRIKRFLR 545
+ RKYN+S+LL R R N S+ + R R
Sbjct: 52 RTSRKYNKSSLLTRTSRKYNTSSLLTRTSR 81
>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
Length = 1168
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 88 NDDTRKKCLDIYEEAKERTDHMIEQKRKKLKKENRLIETIPEDDPEKKKHAV 243
ND K+ L E K+ +E+K+++L++ RL ++ E E K +V
Sbjct: 406 NDAIDKRKLKANENVKKLLTAEVEEKKRRLQRYERLQSSLNEAYKEASKSSV 457
>SB_52757| Best HMM Match : BolA (HMM E-Value=4.8)
Length = 127
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 115 DIYEEAKERTDHMIEQKRKKLKKENRLIETIPED 216
D+ + A E + + + K ENR IET+PED
Sbjct: 6 DLIKAAIEEVNSQSKPFQSKSIDENRFIETLPED 39
>SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088)
Length = 921
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 115 DIYEEAKERTDHMIEQKRKKLKKENRLIETIPED 216
D+ + A E + + + K ENR IET+PED
Sbjct: 96 DLIKAAIEEVNSQSKPFQSKSIDENRFIETLPED 129
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -3
Query: 234 FFFLWIIFRNGFY*AVFLFQLFPFLFYHMICSFLSLFIDVQTFFSCVIIF*CF 76
FFF + R VF F ++P+ F ++ +F+ +FI + F + +F F
Sbjct: 669 FFFAFAFRRLRLDSVVFAFVVYPYFFLFVVFAFV-VFIFIFFFAFVIFVFNAF 720
>SB_17463| Best HMM Match : Protamine_P2 (HMM E-Value=5.6)
Length = 148
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/77 (27%), Positives = 41/77 (53%)
Frame = +1
Query: 100 RKKCLDIYEEAKERTDHMIEQKRKKLKKENRLIETIPEDDPEKKKHAVYVMTMKLFADME 279
R++ L+ EE KER D ++R++ ++ R E + E+K H + + ++ +ME
Sbjct: 65 RERGLERVEE-KERFDLQGHKQRERQRQRER------ERERERKIHGMIMKELE--KEME 115
Query: 280 RKRQHLGSKRHGGKETK 330
+RQ +HG +E +
Sbjct: 116 EERQRQMKGKHGMREER 132
>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
Length = 493
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 130 AKERTDHMIEQKRKKLKKENRLIETIPEDDPEKK 231
+ +R +++QK+K + ENR IE +PE++ K
Sbjct: 181 SSDRKSLLMDQKKKHIVNENR-IEELPEEEATPK 213
>SB_58526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 318 KGNENVRLKLNRRLKCP*RKNGQRILRNLDRVASRAGRPSSPRVKIKR--KRKYNRSNLL 491
KG E R+ L ++ ++ + + +D+ + R +S R+ RK+ + L
Sbjct: 100 KGKEAKRIGLTETIE---KERWSHLAKKVDKEQTPGSRSNSFRITADELIARKFTPKSSL 156
Query: 492 NRNQRADNYSNRIKRF 539
NR Q+++ + + +++F
Sbjct: 157 NRRQKSEVFLSAVQKF 172
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/85 (25%), Positives = 44/85 (51%)
Frame = +1
Query: 76 KTLENDDTRKKCLDIYEEAKERTDHMIEQKRKKLKKENRLIETIPEDDPEKKKHAVYVMT 255
K E DD +++ + +E +E+ E K++K ++E RL+E ++ EK+K +
Sbjct: 373 KRKEADDRQRE--EARKEEEEKRKREGEVKKRK-EEEERLVEARRKEQEEKRK----LEE 425
Query: 256 MKLFADMERKRQHLGSKRHGGKETK 330
K + +R+R+ KR +E +
Sbjct: 426 QKRKEEEDRRRKEAEEKRIKEEEAR 450
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 76 KTLENDD--TRKKCLDIYEEAKERTDHMIEQKRKKLKKENRLIETIPEDDPEKKKH 237
K L++D RK+ ++ E+ +E D + KRK+ + E+ + E + EKK H
Sbjct: 3562 KRLKDDQELARKQRQEVIEKGREIEDLQSKFKRKEREVEDLKHRLLRETEQEKKLH 3617
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,811
Number of Sequences: 59808
Number of extensions: 308613
Number of successful extensions: 1889
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1868
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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