Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0407
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    28   0.061
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    26   0.25 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   0.99 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   1.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.2  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 0.061
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 453 IKRKRKYNRSNLLNRNQRADNYSNRIKRFLR*NYMLKLMPP 575
           I     YN +N  N N   +NY+N  K +   NY+ ++  P
Sbjct: 90  IHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVP 130



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +3

Query: 396 RNLDRVASRAGRPSSPRVKIKRKRKYNRSNLLNRNQRADNYSN 524
           R+ DR      R       +  K  +N +N  N N    NY+N
Sbjct: 66  RSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNN 108


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 396 RNLDRVASRAGRPSSPRVKIKRKRKYNRSNLLNRNQRADNYSNRIKRFLR*NYMLKLMPP 575
           R+ DR      R   P++       YN SN  N N   +NY+ ++  +   NY+ ++  P
Sbjct: 66  RSRDRTERERSR--EPKIISSLSNNYNYSNYNNYNNNYNNYNKKL--YYNINYIEQIPVP 121


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +3

Query: 372 RKNGQRILRNLDRVASRAGRPSSPRVKIKRKRKYNRSNLLNRNQRADNYSN 524
           RK G+   +   R  +   R   P++       Y  SN  N N   +NY+N
Sbjct: 290 RKYGETS-KERSRDRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNN 339


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 396 RNLDRVASRAGRPSSPRVKIKRKRKYNRSNLLNRNQRADNYSNRIKRFLR*NYMLKLMPP 575
           R+ +R   R  R  S   KI      N++   N N   +NY+N  K +   NY+ ++  P
Sbjct: 62  RSKERSRDRTERERSREPKIISSLS-NKTIHNNNNYNNNNYNNYKKLYYNINYIEQVPVP 120


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 456 KRKRKYNRSNLLNRNQRADNYSNRIK 533
           KR++K      + RN R D+Y + +K
Sbjct: 124 KRRKKSLDDVKILRNDRIDSYKSNLK 149


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 525 YYYNYLLSGFGLGGLNDCIFFFFLSL 448
           + YN   +GF LG L   IF    SL
Sbjct: 104 FIYNSFNTGFALGNLGCQIFAVIGSL 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,730
Number of Sequences: 438
Number of extensions: 3101
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)