Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0406
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 31 0.078
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 28 0.73
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 27 1.7
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 27 2.2
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 2.9
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 25 5.1
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 25 5.1
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 5.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 6.8
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 31.5 bits (68), Expect = 0.078
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -3
Query: 349 KKENEGPTYASARKPEAQALKEHNNCILITDSTTVSDGAKAVKRRYSRPKLEIDMKDSQL 170
+K EG + K Q L++ + + S+ + KA ++R PK+EI D ++
Sbjct: 136 RKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILEDDEEI 195
Query: 169 EDV 161
EDV
Sbjct: 196 EDV 198
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/67 (20%), Positives = 30/67 (44%)
Frame = -3
Query: 382 SDERTTPLVDVKKENEGPTYASARKPEAQALKEHNNCILITDSTTVSDGAKAVKRRYSRP 203
S+ R + + + P+Y + E N + + T+ D + + RR++ P
Sbjct: 20 SNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRRFNDP 79
Query: 202 KLEIDMK 182
+++ DMK
Sbjct: 80 EVQSDMK 86
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 27.1 bits (57), Expect = 1.7
Identities = 27/97 (27%), Positives = 46/97 (47%)
Frame = +1
Query: 145 FHLFYIRLQVESLSYLFQALV*NTCVSLPLLHQKLLWSP*SGYSCCVLLRLVPQVCELMH 324
F L Y +V LS++F +++ T + L + + L SGY C+L L P + +
Sbjct: 277 FSLLYFSSEVY-LSFVFWSVL--TSLGLLVWYFPLWHMGISGYEACILFELSPFLLGI-- 331
Query: 325 M*ALHFLF*HRPMVLFFHLKMINLLGHKLVGKSPLRR 435
L F + V+F L +I + +KL + P+ R
Sbjct: 332 --PLLRKFASKVPVIFLFLNVIGIAAYKL--EDPVHR 364
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 364 VLFFHLKMINLLGHKLVGKSPLRR 435
+LFF + + +LG KL GK P +R
Sbjct: 615 ILFFWIARMVMLGLKLTGKIPFKR 638
>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 26.2 bits (55), Expect = 2.9
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = -3
Query: 235 AKAVKRRYSRPKLEIDMKDSQLEDVCKTNGIGEHVKLQ 122
AK KRR R KLEID S L DV + + I E+ LQ
Sbjct: 135 AKNKKRRTMR-KLEIDTNLSFLTDVQRDSPIIENAPLQ 171
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +3
Query: 222 FTAFAPSETVVESVIRIQLLCSFKACASGLRADAYVGPSFSFLTSTNGVVLSS 380
FT PS V E +R L S C + +R + PS+S G +LSS
Sbjct: 116 FTELDPS--VFEKQMRQNYLASVYVCHAAIRRMKEISPSYSRRILLVGSLLSS 166
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -3
Query: 331 PTYASARKPEAQALKEHNNCILITDSTTVSDGAKAVKRRYSRPKLEIDMKDSQLEDVCKT 152
P++ + + E N + TV D + + RRY P+ + D+K + V
Sbjct: 41 PSFVAFTETERLVGDAAKNQAAMNPRNTVFDAKRLIGRRYEDPETQKDIKHWPFK-VIDN 99
Query: 151 NGI 143
NGI
Sbjct: 100 NGI 102
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 424 EISPPVCGPIDLSSSDERTTPLVDVKKENEGPTY 323
E SPP+ + L + D + L K+ N GP +
Sbjct: 156 EFSPPIDRGMTLEAMDSQNDTLFTSKQLNNGPNF 189
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 128 FDVFSNSICFTYVFKLRVFHIYF-KLWSRIP 217
F V SN + +Y+FKLR + YF +L S++P
Sbjct: 3258 FIVNSNGLK-SYIFKLRKWRSYFERLLSKVP 3287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,610
Number of Sequences: 5004
Number of extensions: 36903
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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