Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0406
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0546 - 9381989-9383733,9385838-9386054 30 1.3
05_05_0109 - 22454539-22456268,22457069-22457279 29 1.7
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 29 2.2
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 28 3.9
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 28 3.9
01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229 28 3.9
06_01_0151 + 1131268-1131867 28 5.2
07_03_1516 + 27367518-27368552,27368828-27369097,27369616-27370062 27 6.8
04_04_1001 - 30020380-30021045,30021127-30021210,30022091-300221... 27 6.8
>03_02_0546 - 9381989-9383733,9385838-9386054
Length = 653
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 331 PTYASARKPEAQALKEHNNCILITDSTTVSDGAKAVKRRYSRPKLEIDMK 182
P+Y + E N + + + TV D + + RR+S P ++ DMK
Sbjct: 43 PSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQADMK 92
>05_05_0109 - 22454539-22456268,22457069-22457279
Length = 646
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 331 PTYASARKPEAQALKEHNNCILITDSTTVSDGAKAVKRRYSRPKLEIDMK 182
P+Y + E N + + + TV D + + RR+S P ++ DMK
Sbjct: 41 PSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQSDMK 90
>02_05_0444 -
29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -3
Query: 244 SDGAKAVKRRYSRPKLEIDMKDSQLEDVCKTNGIGEHVKLQKRRKVSGDHTDTRQDRNC 68
S GA +V++R R + K + NG + ++RRK G+ + R +R C
Sbjct: 41 SAGAPSVRQRRVRAAPSVPAKQAARPRPAGENGRTTTTRRRRRRKQQGEEGEERGERGC 99
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 28.3 bits (60), Expect = 3.9
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -3
Query: 421 ISPPVCGPIDLSS---SDERTTPLVDVKKENEGPTYASARKPEAQALKEHNNCILITDST 251
IS P C P DL+S SD T VD++ G T + E NNC TDS
Sbjct: 496 ISSPGCTPNDLNSQSKSDNGETA-VDIENSLSGETSGTVCSSEG------NNCTSATDSL 548
Query: 250 TVSD 239
SD
Sbjct: 549 QKSD 552
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 28.3 bits (60), Expect = 3.9
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -3
Query: 421 ISPPVCGPIDLSS---SDERTTPLVDVKKENEGPTYASARKPEAQALKEHNNCILITDST 251
IS P C P DL+S SD T VD++ G T + E NNC TDS
Sbjct: 514 ISSPGCTPNDLNSQSKSDNGETA-VDIENSLSGETSGTVCSSEG------NNCTSATDSL 566
Query: 250 TVSD 239
SD
Sbjct: 567 RKSD 570
>01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229
Length = 841
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 331 PTYASARKPEAQALKEHNNCILITDSTTVSDGAKAVKRRYSRPKLEIDMK 182
P+Y + E N + + TV D + + RR+S P ++ DMK
Sbjct: 234 PSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDPSVQSDMK 283
>06_01_0151 + 1131268-1131867
Length = 199
Score = 27.9 bits (59), Expect = 5.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 407 NWWGNLHYVVVSIAG 451
+WWG HY++ +IAG
Sbjct: 9 SWWGAKHYIMAAIAG 23
>07_03_1516 + 27367518-27368552,27368828-27369097,27369616-27370062
Length = 583
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -3
Query: 397 IDLSSSDERTTPLVDVKKENEG---PTYASARKPE 302
+D+ +R PL+DV ++EG PTY+++ E
Sbjct: 296 LDIDGKQKRGNPLLDVDGDHEGKLDPTYSTSESQE 330
>04_04_1001 -
30020380-30021045,30021127-30021210,30022091-30022166,
30022241-30022353,30023678-30023683
Length = 314
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 400 PIDLSSSDERTTPLVDVKKENEGPTYASARKPE-AQAL 290
P D+ S T P+ D P AS +KPE AQ L
Sbjct: 275 PEDIPISTTATVPITDEDSSQASPPAASPKKPEPAQGL 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,800,552
Number of Sequences: 37544
Number of extensions: 238730
Number of successful extensions: 553
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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