Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0406
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54760.1 68416.m06059 dentin sialophosphoprotein-related cont...    28   3.3  
At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70...    27   5.7  
At2g42190.1 68415.m05221 expressed protein ; similar to GP|9826|...    27   5.7  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   7.6  
At1g11630.1 68414.m01335 pentatricopeptide (PPR) repeat-containi...    27   7.6  

>At3g54760.1 68416.m06059 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor (Dentin phosphophoryn DPP,
           Dentin sialoprotein DSP) [Homo sapiens]
          Length = 792

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -3

Query: 397 IDLSSSDERTTPLVDVKKENEGPTYASARKPEAQALKEHNNCILITDSTTVSDGAKAVKR 218
           +D  ++D + T + +    +E P++   +K  A+  + HNN +   D          VKR
Sbjct: 430 LDKKTADVQDTMIEEDDITHEAPSFDPNQKENAEMEENHNNFVYADDEAGSDVKTNGVKR 489

Query: 217 R 215
           +
Sbjct: 490 K 490


>At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70,
           putative strong similarity to heat shock protein
           GI:425194 [Spinacia oleracea]
          Length = 650

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 331 PTYASARKPEAQALKEHNNCILITDSTTVSDGAKAVKRRYSRPKLEID 188
           P+Y +    E        N + +  + TV D  + + RRYS P ++ D
Sbjct: 42  PSYVAFTDSERLIGDAAKNQVAMNPTNTVFDAKRLIGRRYSDPSVQAD 89


>At2g42190.1 68415.m05221 expressed protein ; similar to
           GP|9826|X07453
          Length = 141

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = -3

Query: 202 KLEIDMKDSQLEDVCKTNGIGEHVKLQKRRKVSGDHTDTRQDRN 71
           K+E++ +D +++D   T+   + +K +KR+  +G +TD  ++ N
Sbjct: 58  KMEVEDEDEEIDDGSVTS---KDLKERKRKMSNGSNTDLTEEEN 98


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 131  DVFSNSICFTYVFKLRVFHI 190
            DV S SICF  ++ L+VFH+
Sbjct: 2875 DVPSPSICFLNLYTLQVFHV 2894


>At1g11630.1 68414.m01335 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 405

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = -1

Query: 78  IETVTKKKKKNRDSLSLVPNSCSP 7
           ++++T K+KK+RD+LSL+ +  +P
Sbjct: 32  LKSLTSKQKKSRDTLSLLKSENNP 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,342,611
Number of Sequences: 28952
Number of extensions: 196986
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)