Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0405
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    28   0.97 
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    26   3.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.8  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   6.8  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    25   9.0  

>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 312 DCEYKELYCISSPREALK 365
           D  Y+ L+CIS P EALK
Sbjct: 223 DMSYEPLFCISGPYEALK 240


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 124 WEWTRNMNKLIIHHHRYSKDSIKNN 50
           WE  +++  L+IH + YSK S  ++
Sbjct: 38  WELDKSLQDLLIHDYDYSKTSFSSS 62


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 300  SRLSDCEYKELYCISSPREALKLSLRRQAKLIENYL 407
            + + DC+    YC +        +L  + KL+E++L
Sbjct: 2360 TNVPDCDISRFYCYTKMLGEWMFTLTEKTKLLESFL 2395


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = +3

Query: 243 FASTTHHGIFINLVIYCLRSRLSDCEYKELYCISSPREALKLSLRRQA 386
           +++     + + L+ +CL S ++      L+ + +PR+AL  +L  +A
Sbjct: 504 YSTFVSSALAVELLKFCLNSYVNFVSVCTLFGLETPRDALLTTLSNKA 551


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 191 FNFRLNQFC---ITTSIELSFRIDNSSWHIY 274
           + + +N++C       + LS RI +S WH+Y
Sbjct: 197 YPWEINRWCGGIENIKMNLSMRIYSSKWHVY 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,473
Number of Sequences: 5004
Number of extensions: 36405
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)