Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0405
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072...    29   3.0  

>07_03_1362 -
           26006159-26006461,26006691-26006841,26006975-26007212,
           26007293-26007503,26007631-26007755,26007895-26008023,
           26008540-26009326
          Length = 647

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 350 RATYTIQLFVLAIAQSTSQTINNQINKYAMMSCRCENLIRWMW 222
           R  Y+ +L V +      + +  + N YA++S  CE+L   +W
Sbjct: 507 RGQYSTKLDVFSFGVLVLEIVTGRRNSYAVVSEHCEDLFSLVW 549


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,273,767
Number of Sequences: 37544
Number of extensions: 208403
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)