Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0405
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20772| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)                 29   3.1  
SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  27   9.4  

>SB_20772| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
          Length = 315

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 270 FINLVIYCLRSRLSDCEYKELYCISSPREALKLSLRRQAKLIENYLI 410
           F+N+++Y LR        KEL+C  +P+E   ++ R Q   +E  +I
Sbjct: 255 FLNVLVYYLRMPEFQKALKELFCRGTPQEC--VNCRHQVHQVEPAVI 299


>SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 220 NHIHRIKFSHRQLIMAYLLIWLFIVCE 300
           NH ++IK  H Q +  YL ++LF+ C+
Sbjct: 59  NHKNKIKTRHVQDMKLYLSVFLFVSCQ 85


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 365 LQCLSRATYTIQLFVLAIAQSTSQTINNQINKYAMMSCRCENLIRWMWLC 216
           L+C +R   T +   L +  +T+ +  N++    + SC  +NL R +WLC
Sbjct: 572 LKCFARDV-TCKHIQLKLDNTTAVSYVNKMG--GIRSCNLDNLTREIWLC 618


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,475,855
Number of Sequences: 59808
Number of extensions: 249395
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)