Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0405
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40260.1 68418.m04884 nodulin MtN3 family protein similar to ...    28   4.4  
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam...    27   7.7  

>At5g40260.1 68418.m04884 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 239

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 460 GIGFVCDLIYSFLYLCYCG 516
           G+G V +L Y  +YL YCG
Sbjct: 77  GVGLVIELFYVGVYLMYCG 95


>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 756

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -2

Query: 511 NNTSIKMNRSNRKQIQYRLPSTYLKYHYK 425
           N+T +K +R N ++I+ +L   ++++H K
Sbjct: 239 NHTELKFSRDNLRKIEEKLICAFVEFHRK 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,126,229
Number of Sequences: 28952
Number of extensions: 178556
Number of successful extensions: 409
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)