Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0404
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 52 6e-08
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 39 5e-04
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 38 0.001
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 38 0.001
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 38 0.001
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 37 0.003
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 35 0.008
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 33 0.032
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 32 0.056
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 31 0.097
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 31 0.097
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 30 0.22
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 30 0.30
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 29 0.52
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 29 0.52
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 29 0.69
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 28 0.91
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 28 0.91
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 28 1.2
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 28 1.2
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 28 1.2
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 27 1.6
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 1.6
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 27 1.6
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 2.1
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 2.1
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 27 2.8
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 26 3.7
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 6.4
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 6.4
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 8.5
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 25 8.5
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 25 8.5
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 52.0 bits (119), Expect = 6e-08
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = -3
Query: 586 KNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLW 407
K+ G ++ RSD K+ + GWDG R++S ++ PL VL H I +A+
Sbjct: 295 KHCGQQNIRIRSDNKILATAGWDGRGRVYSCQTLAPLAVLKYHSDGINSLAFHP------ 348
Query: 406 KAYIMAAGGLDGAITLWDLY 347
+ ++A D I+LW LY
Sbjct: 349 GSNVIALASKDTRISLWKLY 368
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 39.1 bits (87), Expect = 5e-04
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = -3
Query: 577 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 398
GI + + DG + +SGG D RI+ S + ++VL EH + I +A+S Y
Sbjct: 309 GIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSP------NGY 362
Query: 397 IMAAGGLDGAITLWDL 350
+A D + +WDL
Sbjct: 363 QLATSSADDTVKIWDL 378
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/74 (21%), Positives = 30/74 (40%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
+G + D ++I+ + + H + DV Y V+ + +A G DG
Sbjct: 360 NGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGVNRF----IATSGYDG 415
Query: 370 AITLWDLYNSQAMK 329
+ LW+ N +K
Sbjct: 416 CVKLWNPLNCSLIK 429
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -3
Query: 577 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTE-HKQAIQDVAYSTEKVSLWKA 401
G+ V DGK GG D + I+S F +R LV + HK + DV + +
Sbjct: 366 GLTCVTWSPDGKFIAIGGKDDLVSIYS-FPLRKLVARCQGHKSWVTDVIFDAWRCD-DDN 423
Query: 400 YIMAAGGLDGAITLWD 353
Y +A+ GLD + LWD
Sbjct: 424 YRIASVGLDRKLLLWD 439
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/75 (25%), Positives = 39/75 (52%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 395
++ ++ SDG+ +G DG I+++ S +V T+H A+ + +S + +
Sbjct: 342 LSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSK------RGNV 395
Query: 394 MAAGGLDGAITLWDL 350
+ + LDG++ WDL
Sbjct: 396 LFSSSLDGSVRAWDL 410
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/75 (22%), Positives = 32/75 (42%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 395
++ + S G + SG WD +RI+ FS +V + +A+ +
Sbjct: 470 VSSLSFNSSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKE------ 523
Query: 394 MAAGGLDGAITLWDL 350
+ LDG +T W++
Sbjct: 524 VCVASLDGQLTFWNV 538
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 37.5 bits (83), Expect = 0.001
Identities = 24/78 (30%), Positives = 37/78 (47%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
+GK SG D IRIF S + L +L H+ I+ V ++ EK+ +GG DG
Sbjct: 398 NGKFIVSGSSDLTIRIFEASSGKLLRMLQGHEDLIRTVRFNDEKI--------VSGGYDG 449
Query: 370 AITLWDLYNSQAMK*SHN 317
+ +W+ + HN
Sbjct: 450 TVRIWNFNTGEQHCVLHN 467
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 36.7 bits (81), Expect = 0.003
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -3
Query: 556 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG- 380
RSDG SGG D ++I+ S P T H A++ VA+ W++ ++A GG
Sbjct: 313 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-----WQSNLLATGGG 367
Query: 379 -LDGAITLWD 353
+D I W+
Sbjct: 368 TMDKQIHFWN 377
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 35.1 bits (77), Expect = 0.008
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -3
Query: 547 GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGA 368
G + SG WD +RI++ L +L H + I V+ S + + A DG
Sbjct: 150 GTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSISAD------GTLCATASYDGM 203
Query: 367 ITLWDLYNSQAMK 329
+WD+ + Q +K
Sbjct: 204 ARIWDVLSGQCLK 216
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 33.1 bits (72), Expect = 0.032
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 395
+ V DGK +G D IRI+ R +LT H+Q I + +S + +L
Sbjct: 337 VRSVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTL----- 391
Query: 394 MAAGGLDGAITLWDL 350
+G D + LWD+
Sbjct: 392 -VSGSGDRTVCLWDV 405
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 32.3 bits (70), Expect = 0.056
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = -3
Query: 541 VFTSGGWDGHIRIFSWFSMRPLV-VLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAI 365
V +SGG D HI + VLT H+Q + + +++ + ++A+GG D A+
Sbjct: 345 VLSSGGRDNHILHRDVRAPEHYFRVLTAHRQEVCGLEWNSNE------NLLASGGNDNAL 398
Query: 364 TLWDLYNSQAMK*SHNVI 311
+WD + + + HN I
Sbjct: 399 MVWDKFEEKPLYSFHNHI 416
Score = 30.7 bits (66), Expect = 0.17
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = -3
Query: 553 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG-- 380
S+ + SGG D + ++ F +PL H A++ + +S + I+A+GG
Sbjct: 384 SNENLLASGGNDNALMVWDKFEEKPLYSFHNHIAAVKAITWSPHQRG-----ILASGGGT 438
Query: 379 LDGAITLWDLYNSQAMK*SHNV 314
D I LW N+Q HN+
Sbjct: 439 ADRTIKLW---NTQRGSMLHNI 457
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 31.5 bits (68), Expect = 0.097
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DG+ SG G+ + W + + + L H +Q +A+ ++ S + + +DG
Sbjct: 497 DGRFVFSGDSSGNACFWDWKTCKLMAKLPAHSGPVQSMAFHPQETS----KVATSSIVDG 552
Query: 370 AITLWD 353
+I WD
Sbjct: 553 SIKYWD 558
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 31.5 bits (68), Expect = 0.097
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
D F S GWD ++++ + H + V S + + A+GG DG
Sbjct: 161 DNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPD------GSLCASGGRDG 214
Query: 370 AITLWDLYNS 341
+ LWDL S
Sbjct: 215 TLMLWDLNES 224
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 30.3 bits (65), Expect = 0.22
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = -3
Query: 556 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG- 380
RS G++ SGG D ++ ++ + S RPL EH A++ + +S + I+A+GG
Sbjct: 259 RSLGQL-ASGGNDNNLFVWDYRSSRPLHKFEEHTAAVKAIGWSPHQRG-----ILASGGG 312
Query: 379 -LDGAITL 359
+D +T+
Sbjct: 313 TIDRCLTI 320
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 29.9 bits (64), Expect = 0.30
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = -3
Query: 532 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 353
SGG+DG IR++ P V+ H +AI DV + S +++AGG +I +WD
Sbjct: 182 SGGYDGTIRLWDTRIADPEVMSFSHGEAI-DVVLPMQSGST----VISAGG--PSIKVWD 234
Query: 352 L 350
L
Sbjct: 235 L 235
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -3
Query: 394 MAAGGLDGAITLWD--LYNSQAMK*SH 320
+ +GG DG I LWD + + + M SH
Sbjct: 180 LVSGGYDGTIRLWDTRIADPEVMSFSH 206
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 29.1 bits (62), Expect = 0.52
Identities = 16/78 (20%), Positives = 34/78 (43%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 395
+ V DG S +G I ++ + R + + H+ I +++S E +
Sbjct: 508 VTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSREST------V 561
Query: 394 MAAGGLDGAITLWDLYNS 341
+ +GG D + WD++ +
Sbjct: 562 LVSGGSDCTVRAWDVFKT 579
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 29.1 bits (62), Expect = 0.52
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DG +GG D +R+ W S +T + + V S K +AAG DG
Sbjct: 115 DGTYIATGGMDSQVRL--WKSSTGFEFITAFETVDEIVWLSWHP----KGLFLAAGCNDG 168
Query: 370 AITLWDLYNSQAMK 329
+I +W L + + ++
Sbjct: 169 SIWMWSLPSGKVVQ 182
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 28.7 bits (61), Expect = 0.69
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 385 GGLDGAITLWDLYNS 341
GG+DGAI +WDL N+
Sbjct: 195 GGIDGAIKIWDLRNN 209
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 28.3 bits (60), Expect = 0.91
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 577 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVV-LTEHKQAIQDVAYSTEKVSL 410
GIN + + G +F +GG DG ++++ P + TE AI +S + L
Sbjct: 548 GINMAQWQPKGNLFVTGGSDGIVKVWDLRLNNPFIQNFTEMNSAITYGGFSEDASKL 604
Score = 27.1 bits (57), Expect = 2.1
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Frame = -3
Query: 592 TIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRP--LVVLTEH---KQAIQDVAYS 428
T IN + G + TS G D + F W S +P + L +H K D A
Sbjct: 485 TTTQKDINHATISNSGILVTSSGTDN--QTFVWDSRKPDKPLSLLKHGKTKMIHFDGANE 542
Query: 427 TE-----KVSLW--KAYIMAAGGLDGAITLWDL 350
E ++ W K + GG DG + +WDL
Sbjct: 543 EEVDAGINMAQWQPKGNLFVTGGSDGIVKVWDL 575
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 0.91
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = -3
Query: 592 TIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVS 413
T+K+ ++ ++G SG +G + I+ + VLT H +AIQ V +S+
Sbjct: 21 TLKHGHATSIRFSTNGYHLASGLVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCWSS---- 76
Query: 412 LWKAYIMAAGGLDGAITLWDL 350
+++ A D LWDL
Sbjct: 77 -CDRFLLTA-SRDWKCILWDL 95
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -3
Query: 520 DGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 350
D IRI++W S + +LT H + A+ + ++ + LD + +WD+
Sbjct: 116 DQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSE------DLIVSASLDQTVRVWDI 166
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DG F SGG D + +F +R + + + A++ +++ + SL AG D
Sbjct: 333 DGSQFASGGNDNRVCLFKGSDLRQPLYVWQQNAAVKALSFCPWQRSL---LATGAGSHDK 389
Query: 370 AITLWDLYNSQ 338
I ++ +N +
Sbjct: 390 HIRFYNCFNGK 400
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -3
Query: 442 DVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSQAMK*SHNVI 311
D A + +K++L+ Y+ AGG+D + NS+ + ++N+I
Sbjct: 453 DRANNPDKINLYAVYVEDAGGMDLIHECQNSSNSEIYQKAYNII 496
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = -3
Query: 553 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 374
+DG S G I+++ S V +H + +++S + I+ +GG D
Sbjct: 539 ADGLSLASADESGIIKVWDLRSSNQHVSFVKHSSIVYSLSFSYDNK------ILVSGGAD 592
Query: 373 GAITLWDL 350
+ WDL
Sbjct: 593 TDVNFWDL 600
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = -3
Query: 532 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 353
SG D IRI+ + +PL+VL + I K+ G DG++ LWD
Sbjct: 604 SGSADSTIRIWDLNTGKPLMVLPSNSGYISSFVSDEHKI---------ISGNDGSVKLWD 654
Query: 352 LYNSQAMK 329
+ + ++
Sbjct: 655 VRTGKLLR 662
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAY 431
DG++ GG GHI F W + + L L ++ ++DV +
Sbjct: 112 DGRMILLGGRKGHISAFDWRTGKLLTEL-HLRETVRDVKW 150
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DGK +G D I+++ + + V + H+Q I + +S +I++ G D
Sbjct: 371 DGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHN-----GRFIVSGSG-DR 424
Query: 370 AITLWDLYNSQAM 332
LWD+ Q +
Sbjct: 425 TARLWDVETGQCI 437
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
D SG D IRI+ S + L L+ H + + VAY+ Y A+ G D
Sbjct: 439 DDTFVLSGSEDDKIRIWHRESGKLLATLSGHVKCVNYVAYNPV-----DPYQFASAGDDN 493
Query: 370 AITLW 356
+ +W
Sbjct: 494 TVRIW 498
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = -3
Query: 595 VTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFS------WFSMR 482
++++ +N + + DG++F SG D ++ FS WFS R
Sbjct: 177 ISVQGINVNCIVSSEDGRIFFSGNKDPNLYEFSYQLEEGWFSRR 220
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 478 LVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYN 344
L + EH ++ V S K S K+ ++A+GGLD I +WD YN
Sbjct: 116 LSTIGEHTDYVKRV--SIPKYS--KSPLVASGGLDKRIIVWD-YN 155
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3
Query: 541 VFTSGGWDGHIRIF 500
+F SG WDG+IR++
Sbjct: 425 LFASGSWDGNIRLW 438
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFS 497
I+ + SDG + +G WD +R++S
Sbjct: 277 ISSLALTSDGTMLATGSWDECVRLWS 302
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 397 IMAAGGLDGAITLWDLYN 344
+M +GG + +I +WDL N
Sbjct: 62 LMVSGGANSSINVWDLQN 79
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 315 LYCDLQVMICHSLCQFCLYTSTNALIDYIFGQ-HYKLR 205
+Y L ++IC + + + NA++ I+GQ +Y L+
Sbjct: 359 MYTRLWIVICFGIVAYASIVAANAILIGIYGQMNYYLK 396
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRI 503
IN + G + SGG DG++R+
Sbjct: 291 INTIAVHPKGTGYASGGEDGYVRV 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,593
Number of Sequences: 5004
Number of extensions: 47962
Number of successful extensions: 179
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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