Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0404
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_9416| Best HMM Match : WD40 (HMM E-Value=0) 36 0.033
SB_5480| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15) 35 0.058
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39) 33 0.13
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 31 0.54
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 31 0.94
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27) 30 1.6
SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07) 29 2.2
SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35) 29 3.8
SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11) 28 6.6
SB_42943| Best HMM Match : WD40 (HMM E-Value=0) 28 6.6
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15) 28 6.6
SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0) 28 6.6
SB_23041| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = -3
Query: 553 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 374
+DGK+ S WD + I + +P+ L H + A++ E+ I+ +G D
Sbjct: 11 NDGKLLASASWDKFVIISDVPTGKPVNTLAGHTTGVWTCAFNPERT----GDILCSGADD 66
Query: 373 GAITLWDLYNSQAM 332
G++ LWD+ ++ +
Sbjct: 67 GSLKLWDIRSNSVV 80
>SB_9416| Best HMM Match : WD40 (HMM E-Value=0)
Length = 700
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/88 (26%), Positives = 42/88 (47%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 395
+N + +GK S D ++++ + L HK +Q +AY++ K +
Sbjct: 79 VNDIVLCRNGKTILSASSDTTVKVWDATRGFCMSTLRTHKDYVQALAYASCKEHV----- 133
Query: 394 MAAGGLDGAITLWDLYNSQAMK*SHNVI 311
A+GGLD I LWD+ A+ ++N +
Sbjct: 134 -ASGGLDKQIFLWDVNTLTALTATNNTV 160
>SB_5480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -3
Query: 589 IKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMR---PLVVLTEHKQAIQDVAYSTEK 419
I P ++ V +G+ G DG I+IFS+ + P L +H++A+ V + +
Sbjct: 193 INPPFVHSVHVPGNGRKVAVGLEDGSIQIFSFEGKKNIAPWARLKKHRRAVCQVHFP--R 250
Query: 418 VSLWKAYIMAAGGLDGAITLWDLYNSQA 335
++ +GG D I +W L+N Q+
Sbjct: 251 FGSLGDNVLISGGNDEHIIVWKLWNRQS 278
>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
Length = 1277
Score = 34.7 bits (76), Expect = 0.058
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 598 DVTIKNPGINKVKTRSDGKVFTSGGWDGHIR 506
+V +K G+ VK R D ++ SG WDG R
Sbjct: 133 EVQLKTEGVASVKVRCDSRILASGAWDGRGR 163
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
D K +GG DG IR++ + + + L L +H + + +A S A + +G D
Sbjct: 717 DTKKIITGGADGSIRVWDYETGKELNKLLDHTKLVYTLALSPH------ADFLVSGAFDH 770
Query: 370 AITLWDL 350
+ +WD+
Sbjct: 771 TVKIWDM 777
>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
Length = 574
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = -3
Query: 595 VTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTE-HKQAIQDVAYSTEK 419
+ + N N V + DGK F SG DG IR+F S + +++ H + + V ++
Sbjct: 214 IVVPNVTCNTVDIQKDGKAFVSGWDDGKIRVFRPESGQLFYEISDAHSKGVTAVIVNSTC 273
Query: 418 VSLWKAYIMAAGGLDGAITLWDLYNSQAMK*SHNVI 311
+ +GG +G + +W+ M H +
Sbjct: 274 SKI------VSGGGEGQVRVWEGKKLLGMMKEHKAV 303
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -3
Query: 541 VFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAIT 362
+ G +G + ++S S PLV + H+ +Q +A +K L+ MA GLDG +
Sbjct: 628 IINLGHHNGTVTMWSPSSPDPLVKMLCHRGPVQAIAI--DKQGLY----MATTGLDGQMK 681
Query: 361 LWDL 350
+WD+
Sbjct: 682 MWDV 685
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 395
+N + DG +GG DG +++++ + V EH ++ V +S +
Sbjct: 1254 MNVLAYSPDGNYIATGGDDGKVKLWNTMTGFCFVTFHEHSASVTAVTFSP------NGQV 1307
Query: 394 MAAGGLDGAITLWDL 350
+ + LDG + +DL
Sbjct: 1308 VLSASLDGTVRAFDL 1322
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -3
Query: 541 VFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAIT 362
V SG WD +R+++ F + V E DV + +A LDGA+T
Sbjct: 1393 VLISGAWDKTVRLWNVFESK---VSRETLNLTSDVVSIAVRPD---GREVAISSLDGALT 1446
Query: 361 LWDL 350
WDL
Sbjct: 1447 FWDL 1450
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -3
Query: 553 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 374
SDG + TSG D +R++ + L H + VAYS + +W +A+ D
Sbjct: 1468 SDGALLTSGSRDRTVRVWDCAAAEKLKKARFHSERCWSVAYSDD--GMW----LASASDD 1521
Query: 373 GAITLWDLYNSQ 338
+ +W++ Q
Sbjct: 1522 FKVCVWNMATQQ 1533
>SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27)
Length = 855
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 577 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEK 419
GI V +DGK+ G G++RI+ M+ ++ H+ + V +S K
Sbjct: 590 GIKTVAISADGKLLAVGDKIGNVRIYDTVHMKERYKISAHESEVLCVEFSPLK 642
>SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 400 YIMAAGGLDGAITLWDLYNSQ 338
+++AAGG DG +++WD+ Q
Sbjct: 211 HLLAAGGQDGVLSIWDMRQEQ 231
>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
Length = 711
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 400 YIMAAGGLDGAITLWDLYNSQ 338
+++AAGG DG +++WD+ Q
Sbjct: 35 HLLAAGGQDGVLSIWDMRQEQ 55
>SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)
Length = 844
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/90 (22%), Positives = 34/90 (37%)
Frame = -3
Query: 598 DVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEK 419
++T P + D KV S DG+I ++ + + H + S +
Sbjct: 422 ELTSNAPACYALAMSPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISPDG 481
Query: 418 VSLWKAYIMAAGGLDGAITLWDLYNSQAMK 329
LW GGLD + WDL + ++
Sbjct: 482 TKLW------TGGLDNTVRSWDLREGRQLQ 505
>SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = -3
Query: 556 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGL 377
RSDG++ +GG DG I++F S L H + + + + +I++A
Sbjct: 90 RSDGQLMIAGGEDGLIQLFDLNSRAVLRQFKGHSGPVHVTKFLQDNL-----HIVSASD- 143
Query: 376 DGAITLWDLYNSQ 338
D + WD+ Q
Sbjct: 144 DKLVNCWDIATEQ 156
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY-----IMAA 386
DG+ +G DG I ++++ + + + + K Q+ ++ L + ++A+
Sbjct: 225 DGQYLVTGSVDGFIEVWNFTTGK---IRKDLKYQAQENFMMMDETVLCLTFSRDSEMLAS 281
Query: 385 GGLDGAITLWDLYNSQAMK 329
GG DG I +W L Q ++
Sbjct: 282 GGQDGKIKVWKLQTGQCLR 300
>SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)
Length = 256
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = -3
Query: 397 IMAAGGLDGAITLWD 353
++A+GG+DGA+ +WD
Sbjct: 195 LLASGGMDGAVRVWD 209
>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
Length = 273
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = -3
Query: 595 VTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKV 416
+T N ++ V SDG+ SG WD +R++ + H + + VA+S +
Sbjct: 96 LTGHNHFVSDVVMSSDGQFALSGSWDKTLRLWDLNAGVTTRRFVGHTKDVLSVAFSADNR 155
Query: 415 SLWKAYIMAAGGLDGAITLWD 353
+ +G D I LW+
Sbjct: 156 QI------VSGARDHHIKLWN 170
>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = -3
Query: 553 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 374
S G+V +GG D + +++ ++ L H ++ V +++ + ++ AG
Sbjct: 29 STGRVMVTGGEDRKVNMWAVGQPNVIMSLAGHTSPVECVQFNSGE------DLVVAGSQS 82
Query: 373 GAITLWDL 350
G + +WDL
Sbjct: 83 GTLKIWDL 90
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSW 494
+N ++ DG+ SGG DG +++ W
Sbjct: 183 VNHLRFSPDGRWIISGGEDGAAKVYGW 209
>SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)
Length = 365
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = -3
Query: 541 VFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAIT 362
+ ++ D + + SW +P+ + I V + S + AA D IT
Sbjct: 247 MISTNAHDADVNVISWNRGQPVALFKHSTGPITSVEWHPTDGS-----VFAASSADNQIT 301
Query: 361 LWDL 350
LWDL
Sbjct: 302 LWDL 305
>SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0)
Length = 756
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 457 KQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYN 344
K+ +DV + V + Y++ G L+GAI + D N
Sbjct: 585 KEGDEDVEFRVINVQVHGGYVLHVGALEGAIRVGDTMN 622
>SB_23041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 595 VTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQA 449
V +NP IN+V + +G D ++ W S+ L L H QA
Sbjct: 2 VADRNPLINRVDKHTSSCASNAGNLDTAVQYRFWSSLGSLAPLKTHYQA 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,326,257
Number of Sequences: 59808
Number of extensions: 323997
Number of successful extensions: 703
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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