Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0404
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 57 8e-09
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 40 0.002
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 37 0.009
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 37 0.012
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 36 0.020
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 36 0.020
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 36 0.020
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 35 0.036
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 35 0.047
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 35 0.047
At5g50650.1 68418.m06276 WD-40 repeat family protein / St12p pro... 33 0.14
At5g50550.1 68418.m06260 WD-40 repeat family protein / St12p pro... 33 0.14
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 33 0.19
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 33 0.19
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 32 0.25
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 32 0.25
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 32 0.33
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 32 0.33
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 31 0.44
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 31 0.44
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 31 0.44
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 31 0.58
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 31 0.58
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.77
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 31 0.77
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 30 1.0
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 30 1.0
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 30 1.0
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 30 1.0
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 30 1.3
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 30 1.3
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 30 1.3
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 29 1.8
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 29 1.8
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 29 1.8
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 29 2.4
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 29 2.4
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 29 2.4
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 29 2.4
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 29 3.1
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 3.1
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 3.1
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 3.1
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 3.1
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 3.1
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 28 4.1
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 28 4.1
At4g24805.1 68417.m03553 expressed protein 28 4.1
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 28 4.1
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 28 4.1
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 4.1
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 4.1
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 28 5.4
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 28 5.4
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 28 5.4
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 28 5.4
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 28 5.4
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf... 27 7.2
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 27 7.2
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 27 7.2
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 27 7.2
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 27 7.2
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 27 7.2
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 27 7.2
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 27 9.5
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 57.2 bits (132), Expect = 8e-09
Identities = 25/84 (29%), Positives = 44/84 (52%)
Frame = -3
Query: 598 DVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEK 419
++T++ PG++ R DGK+ + GWD IR++++ L +L H+ V+YS +
Sbjct: 303 EITLERPGVSGTSIRVDGKIAATAGWDHRIRVYNYRKGNALAILKYHRATCNAVSYSPD- 361
Query: 418 VSLWKAYIMAAGGLDGAITLWDLY 347
+MA+ D + LW LY
Sbjct: 362 -----CELMASASEDATVALWKLY 380
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = -3
Query: 565 VKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAA 386
+K D + SGG D + +++ S +P++ LTEH A++ + +S + SL +
Sbjct: 304 LKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLLAS---GG 360
Query: 385 GGLDGAITLWDLYNSQAM 332
G D I W+ N +
Sbjct: 361 GTADRCIRFWNTTNGNQL 378
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -3
Query: 553 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 374
SDGK+ S G D ++ +M+P L EH I D+ +S ++ L A D
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRL------ATSSFD 714
Query: 373 GAITLWDLYN 344
+ +WD N
Sbjct: 715 KTVRVWDADN 724
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = -3
Query: 577 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 398
G+ + S+ + SG DG + I + + + + L H +++ V +S ++ A
Sbjct: 244 GLTCLDINSNSSLAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIPLA- 302
Query: 397 IMAAGGLDGAITLWDLYNS 341
A GG+D + +WDL +S
Sbjct: 303 --ATGGMDKKLIIWDLQHS 319
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DG++ SGG DG ++IF S VL I+ V + + +I+ AG D
Sbjct: 124 DGQLLASGGLDGVVQIFDASSGTLKCVLDGPGAGIEWVRWHP------RGHIVLAGSEDC 177
Query: 370 AITLWD 353
++ +W+
Sbjct: 178 SLWMWN 183
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 35.9 bits (79), Expect = 0.020
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DG+ SG DG I ++ + R + L H + ++YS E ++A+G D
Sbjct: 552 DGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGE------GSLLASGSADC 605
Query: 370 AITLWDLYNS 341
+ LWD+ +S
Sbjct: 606 TVKLWDVTSS 615
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = -3
Query: 577 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 398
G+N ++ DG+ SGG D ++++ + + L H+ IQ + + + +
Sbjct: 145 GVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHE------F 198
Query: 397 IMAAGGLDGAITLWDL 350
++A G D + WDL
Sbjct: 199 LLATGSADRTVKFWDL 214
Score = 35.5 bits (78), Expect = 0.027
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = -3
Query: 556 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGL 377
R +V +GG D + +++ ++ L H I V + +V ++AAG
Sbjct: 26 RKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEV------LVAAGAA 79
Query: 376 DGAITLWDLYNSQAMK 329
G I LWDL ++ ++
Sbjct: 80 SGTIKLWDLEEAKIVR 95
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = -3
Query: 577 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 398
G+N ++ DG+ SGG D ++++ + + L H+ IQ + + + +
Sbjct: 145 GVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHE------F 198
Query: 397 IMAAGGLDGAITLWDL 350
++A G D + WDL
Sbjct: 199 LLATGSADRTVKFWDL 214
Score = 35.5 bits (78), Expect = 0.027
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = -3
Query: 556 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGL 377
R +V +GG D + +++ ++ L H I V + +V ++AAG
Sbjct: 26 RKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEV------LVAAGAA 79
Query: 376 DGAITLWDLYNSQAMK 329
G I LWDL ++ ++
Sbjct: 80 SGTIKLWDLEEAKIVR 95
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 35.1 bits (77), Expect = 0.036
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = -3
Query: 577 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 398
G+N ++ DG+ SGG D ++++ + + L H+ IQ + + + +
Sbjct: 238 GVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHE------F 291
Query: 397 IMAAGGLDGAITLWDL 350
++A G D + WDL
Sbjct: 292 LLATGSADKTVKFWDL 307
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = -3
Query: 556 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGL 377
R +V +GG D + +++ ++ L H I V + + ++AAG
Sbjct: 119 RKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEG------LVAAGAA 172
Query: 376 DGAITLWDLYNSQAMK 329
G I LWDL ++ ++
Sbjct: 173 SGTIKLWDLEEAKVVR 188
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 34.7 bits (76), Expect = 0.047
Identities = 16/52 (30%), Positives = 32/52 (61%)
Frame = -3
Query: 484 RPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSQAMK 329
R + LT H +A+ + +ST V +++A+ GLDGA+ +W+++++ K
Sbjct: 151 RMSISLTGHTKAVTAIDWSTSHV-----HLLASAGLDGAVYVWNVWSNDKKK 197
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -3
Query: 565 VKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAA 386
+K SD + SGG D + +++ S +P++ EH A++ +A+S L +
Sbjct: 298 LKWSSDNRELASGGNDNKLFVWNQHSTQPVLRFCEHAAAVKAIAWSPHHFGLLAS---GG 354
Query: 385 GGLDGAITLWD 353
G D I W+
Sbjct: 355 GTADRCIRFWN 365
>At5g50650.1 68418.m06276 WD-40 repeat family protein / St12p
protein, putative contains 4 WD-40 repeats (PF0400);
similar to St12p protein GI:166878 [Arabidopsis
thaliana]
Length = 383
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYS 428
DG V +G DG +R+F W SM+ L+ ++ +++ + +S
Sbjct: 153 DGTVLATGAEDGTLRVFEWPSMKTLLNESKTHASVKSLTFS 193
>At5g50550.1 68418.m06260 WD-40 repeat family protein / St12p
protein, putative contains 4 WD-40 repeats (PF0400);
similar to St12p protein GI:166878 [Arabidopsis
thaliana]
Length = 383
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYS 428
DG V +G DG +R+F W SM+ L+ ++ +++ + +S
Sbjct: 153 DGTVLATGAEDGTLRVFEWPSMKTLLNESKTHASVKSLTFS 193
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTE 422
+ V SDG+ SG WDG +R++ + H + + VA+ST+
Sbjct: 66 VEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFSTD 116
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -3
Query: 532 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 353
S WD +++++ + + L H + VA S + + A+GG DG I LWD
Sbjct: 168 SASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPD------GSLCASGGKDGVILLWD 221
Query: 352 L 350
L
Sbjct: 222 L 222
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTE 422
+ V SDG+ SG WDG +R++ + H + + VA+ST+
Sbjct: 66 VQDVVLSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAFSTD 116
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -3
Query: 532 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 353
S WD +++++ + + L H + VA S + + A+GG DG I LWD
Sbjct: 168 SASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPD------GSLCASGGKDGVILLWD 221
Query: 352 L 350
L
Sbjct: 222 L 222
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -3
Query: 565 VKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAA 386
+K D + SGG D + +++ S +P++ +EH A++ +A+S L +
Sbjct: 341 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSPHVHGLLAS---GG 397
Query: 385 GGLDGAITLWD 353
G D I W+
Sbjct: 398 GTADRCIRFWN 408
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 395
++ V RSDG +F + G +++F L L H + V Y + K ++
Sbjct: 96 VSSVCFRSDGALFAACDLSGVVQVFDIKERMALRTLRSHSAPARFVKYPVQD----KLHL 151
Query: 394 MAAGGLDGAITLWDL 350
++ GG DG + WD+
Sbjct: 152 VS-GGDDGVVKYWDV 165
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 31.9 bits (69), Expect = 0.33
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = -3
Query: 583 NPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWK 404
N +N++ G F G + + S+ S++PL LT H +A K
Sbjct: 149 NYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPSLKPLDTLTAHTAGCYCIAIDP------K 202
Query: 403 AYIMAAGGLDGAITLWDL 350
A G D ++LWD+
Sbjct: 203 GRYFAVGSADSLVSLWDI 220
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -3
Query: 532 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 353
S WD +++++ + + L H + VA S + + A+GG DG + LWD
Sbjct: 169 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD------GSLCASGGKDGVVLLWD 222
Query: 352 L 350
L
Sbjct: 223 L 223
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTE 422
+ V SDG+ SG WDG +R++ + H + + VA+S +
Sbjct: 66 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 116
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DGK SG D +R++ ++ PL HK + VA+S + L +G G
Sbjct: 120 DGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHL------VSGSKSG 173
Query: 370 AITLWD 353
I W+
Sbjct: 174 EICCWN 179
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 31.5 bits (68), Expect = 0.44
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = -3
Query: 574 INKVKTRSD--GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHK-QAIQDVAYSTEKVSLWK 404
++ +K R D G+V SG +DG + + P+ EH + I V Y+ SL
Sbjct: 124 LSSLKWRPDFSGRVIGSGDYDGVVTEYDVEKQVPVSERDEHGGRRIWSVDYTLYNGSL-- 181
Query: 403 AYIMAAGGLDGAITLWDLYNSQAMK 329
I A+G DG + +WD N ++
Sbjct: 182 --IGASGSDDGTVQMWDPRNGGTLE 204
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 31.5 bits (68), Expect = 0.44
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = -3
Query: 592 TIKNPG--INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEK 419
TI+ P +N+++ D K + + + HIR+F S P V+T +A +
Sbjct: 30 TIQYPDSHVNRLEITPD-KHYLAAACNPHIRLFDVNSNSPQPVMTYDSHTNNVMAVGFQC 88
Query: 418 VSLWKAYIMAAGGLDGAITLWDL 350
+ W M +G DG + +WDL
Sbjct: 89 DAKW----MYSGSEDGTVKIWDL 107
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 469 LTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 350
L+ H+ + V +ST S W Y GG DGAI WD+
Sbjct: 186 LSGHRDGVMSVEWSTS--SEWVLY---TGGCDGAIRFWDI 220
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 469 LTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 350
L+ H+ + V +ST S W Y GG DGAI WD+
Sbjct: 186 LSGHRDGVMSVEWSTS--SEWVLY---TGGCDGAIRFWDI 220
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 556 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGL 377
+ DG + S G D R++ + R ++V H + + V +S Y +A+GG
Sbjct: 390 QQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPN------GYHLASGGE 443
Query: 376 DGAITLWDL 350
D +WDL
Sbjct: 444 DNQCRIWDL 452
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/76 (22%), Positives = 36/76 (47%)
Frame = -3
Query: 577 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 398
GI+ ++ DG+ SGG D ++++ + + L H+ I+ + + + +
Sbjct: 144 GISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLE------F 197
Query: 397 IMAAGGLDGAITLWDL 350
++A G D + WDL
Sbjct: 198 LLATGSADRTVKFWDL 213
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRI 503
IN + DGK F+SGG DG++R+
Sbjct: 293 INALAFNPDGKSFSSGGEDGYVRL 316
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRI 503
IN + DGK F+SGG DG++R+
Sbjct: 293 INALAFNPDGKSFSSGGEDGYVRL 316
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -3
Query: 544 KVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAI 365
++ S WD +R++ F+ + V H + VA+ + L A+ LDG I
Sbjct: 490 QLLASSSWDYTVRLWDVFASKGTVETFRHNHDVLTVAFRPDGKQL------ASSTLDGQI 543
Query: 364 TLWD 353
WD
Sbjct: 544 NFWD 547
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -3
Query: 544 KVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAI 365
++ S WD +R++ F+ + V H + VA+ + L A+ LDG I
Sbjct: 530 QLLASSSWDYTVRLWDVFASKGTVETFRHNHDVLTVAFRPDGKQL------ASSTLDGQI 583
Query: 364 TLWD 353
WD
Sbjct: 584 NFWD 587
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRI 503
IN + DGK F+SGG DG++R+
Sbjct: 320 INALAFSPDGKSFSSGGEDGYVRL 343
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 395
IN + +DG + G DG++RIF + + + + + + A+ A+S + Y+
Sbjct: 306 INSIAFSNDGAYLATVGRDGYLRIFDFSTQKLVCGVKSYYGALLCCAWSMD-----GKYL 360
Query: 394 MAAGGLDGAITLWDL 350
+ GG D + +W +
Sbjct: 361 L-TGGEDDLVQVWSM 374
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/76 (22%), Positives = 36/76 (47%)
Frame = -3
Query: 577 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 398
GI+ ++ DG+ SGG D ++++ + + L H+ I+ + + + +
Sbjct: 93 GISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLE------F 146
Query: 397 IMAAGGLDGAITLWDL 350
++A G D + WDL
Sbjct: 147 LLATGSADRTVKFWDL 162
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -3
Query: 547 GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGA 368
G+ SG D ++R++ + H + I + +S + W + +GGLD
Sbjct: 61 GEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPD--GRW----VVSGGLDNV 114
Query: 367 ITLWDL 350
+ +WDL
Sbjct: 115 VKVWDL 120
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 487 MRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSQ 338
+ P ++ H + ++Y+ +L +A G D ++ LWDL N+Q
Sbjct: 335 LSPSFIIHAHDSEVSSISYNIHAPNL-----LATGSADESVKLWDLSNNQ 379
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = -3
Query: 586 KNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLW 407
K+P ++ K +GK D +++ ++ + + L V T H + + T S+
Sbjct: 212 KSPAVSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCI---TSAFSVT 268
Query: 406 KAYIMAAGGLDGAITLWDL 350
+ +G D + LWDL
Sbjct: 269 NGKYIVSGSEDNCVYLWDL 287
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = -3
Query: 586 KNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLW 407
+NP ++ V+ +GK G D +R+++ S + L T H A Q S V+
Sbjct: 197 ENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNA-QYCISSAFSVTNG 255
Query: 406 KAYIMAAGGLDGAITLWDLYNSQAMK 329
K + +G D + +W+L + + ++
Sbjct: 256 KRIV--SGSEDNCVHMWELNSKKLLQ 279
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 454 QAIQDVAYSTEKVSLWKAY-IMAAGGLDGAITLWDLYNSQAM 332
+A +D+ Y ++ Y A GG DG + +WD N + +
Sbjct: 235 EAGRDIVYPVNSIAFHPIYGTFATGGCDGFVNIWDGNNKKRL 276
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSL-WKAYI---MAAG 383
+G++F + G + I+IF S+ + + + ++A ++ SL W +YI +A+
Sbjct: 545 EGELFATAGVNKKIKIFECNSI--VNDNRDIHYPVVELAGRSKLSSLCWNSYIKSQIASS 602
Query: 382 GLDGAITLWDLYNSQ 338
DG + +WD+ SQ
Sbjct: 603 NFDGVVQIWDVARSQ 617
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -3
Query: 532 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 353
S G+D R++ + R +++ H + + V +S Y +A+GG D +WD
Sbjct: 147 SSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPN------GYHLASGGEDNQCRIWD 200
Query: 352 L 350
L
Sbjct: 201 L 201
>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to Lipopolysaccharide-responsive and beige-like anchor
protein (CDC4-like protein) (Beige-like protein)
(SP:P50851) [Homo sapiens}
Length = 1280
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = -3
Query: 529 GGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 350
G W+ + S R + + HK + VA + + I+A G D + +WD+
Sbjct: 1022 GNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADST------ILATGSYDTTVMVWDI 1075
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -3
Query: 553 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 374
+DG F S G DG +++++ + + +H+ + +A K ++A GG D
Sbjct: 593 TDGTQFVSCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGK------KTEMIATGGGD 646
Query: 373 GAITLW 356
I LW
Sbjct: 647 AVINLW 652
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DGK+ S G D + I++ +++ EH I DV + L A D
Sbjct: 519 DGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQL------ATSSFDK 572
Query: 370 AITLWD 353
I +WD
Sbjct: 573 TIKIWD 578
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DGK+ S G D + I++ +++ EH I DV + L A D
Sbjct: 521 DGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQL------ATSSFDK 574
Query: 370 AITLWD 353
I +WD
Sbjct: 575 TIKIWD 580
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DGK+ S G D + I++ +++ EH I DV + L A D
Sbjct: 521 DGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQL------ATSSFDK 574
Query: 370 AITLWD 353
I +WD
Sbjct: 575 TIKIWD 580
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DGK+ S G D + I++ +++ EH I DV + L A D
Sbjct: 521 DGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQL------ATSSFDK 574
Query: 370 AITLWD 353
I +WD
Sbjct: 575 TIKIWD 580
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 550 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 371
DGK+ S G D + I++ +++ EH I DV + L A D
Sbjct: 521 DGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQL------ATSSFDK 574
Query: 370 AITLWD 353
I +WD
Sbjct: 575 TIKIWD 580
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 547 GKVFTSGGWDGHIRIFSWFSM 485
G V +GGWDG IR F + +
Sbjct: 630 GMVIVTGGWDGQIRTFQNYGL 650
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 409 WKAYIMAAGGLDGAITLWDLYNSQAMK 329
W+ + + GGLD + LWD ++ K
Sbjct: 159 WRPWEVITGGLDSKLVLWDFSKGRSQK 185
>At4g24805.1 68417.m03553 expressed protein
Length = 247
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMR 482
+NK + KV+T+ WD +R+FS F R
Sbjct: 69 LNKTQNPKLRKVWTTRDWDRKVRVFSTFFRR 99
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 395
I V+ + S D IRI++W S + VLT H + ++ K +
Sbjct: 96 IRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP------KEDL 149
Query: 394 MAAGGLDGAITLWDL 350
+ + LD + +WD+
Sbjct: 150 VVSASLDQTVRVWDI 164
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 445 QDVAYSTEKVSLWKAY-IMAAGGLDGAITLWDLYNSQAM 332
+D+ Y ++ Y A+GG DG + +WD N + +
Sbjct: 237 RDIVYPVNAIAFHPIYGTFASGGCDGFVNIWDGNNKKRL 275
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = -3
Query: 553 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 374
SDG+ S D ++I + + L +LT H++ V + + I+A+G LD
Sbjct: 113 SDGRTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPR-----HSEIVASGSLD 167
Query: 373 GAITLWDLYNSQAMK 329
+ LW+ + ++
Sbjct: 168 HEVRLWNAKTGECIR 182
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = -3
Query: 553 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 374
SDG+ S D ++I + + L +LT H++ V + + I+A+G LD
Sbjct: 113 SDGRTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPR-----HSEIVASGSLD 167
Query: 373 GAITLWDLYNSQAMK 329
+ LW+ + ++
Sbjct: 168 HEVRLWNAKTGECIR 182
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = -3
Query: 598 DVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAY 431
D+ + + G K+ + G+ +GG GH+ + +M L+ + ++ ++DVA+
Sbjct: 112 DIVLPDFGPYKLDFTASGRHMLAGGRKGHLALLDMMNM-SLIKEIQVRETVRDVAF 166
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 460 HKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSQ 338
H I + S K K + GLDG + +WDL N +
Sbjct: 332 HDNCINSIV-SLSKAGSPKVMRFSTSGLDGKVAIWDLENME 371
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 460 HKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSQ 338
H I + S K K + GLDG + +WDL N +
Sbjct: 332 HDNCINSIV-SLSKAGSPKVMRFSTSGLDGKVAIWDLENME 371
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/61 (21%), Positives = 33/61 (54%)
Frame = -3
Query: 532 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 353
S ++G ++++ + + + EH++ + + YS+ +L +A+G DG++ LW
Sbjct: 551 SSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTL-----LASGSDDGSVKLWS 605
Query: 352 L 350
+
Sbjct: 606 I 606
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/61 (21%), Positives = 33/61 (54%)
Frame = -3
Query: 532 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 353
S ++G ++++ + + + EH++ + + YS+ +L +A+G DG++ LW
Sbjct: 551 SSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTL-----LASGSDDGSVKLWS 605
Query: 352 L 350
+
Sbjct: 606 I 606
>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 512
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -3
Query: 541 VFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAIT 362
V+T+ D I I + R + L E+K ++ + + K W+ GG D A+
Sbjct: 265 VYTADDGDSQISILNLNKTREVTFL-ENKPHVKGIINNI-KFMPWENTCFVTGGSDHAVV 322
Query: 361 LWD 353
LW+
Sbjct: 323 LWN 325
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 547 GKVFTSGGWDGHIRIF 500
G V +GGWDG I++F
Sbjct: 674 GLVIVTGGWDGRIKLF 689
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 547 GKVFTSGGWDGHIRIF 500
G V +GGWDG I++F
Sbjct: 670 GLVIVTGGWDGRIKLF 685
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = -3
Query: 574 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 395
IN + +DG + G DG++RIF + + + + + A+ ++S + YI
Sbjct: 306 INSIAFSNDGAHLATVGRDGYLRIFDFLTQKLVCGGKSYYGALLCCSWSMD-----GKYI 360
Query: 394 MAAGGLDGAITLWDL 350
+ GG D + +W +
Sbjct: 361 L-TGGEDDLVQVWSM 374
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 406 KAYIMAAGGLDGAITLWDLYNSQ 338
K + GLDG I +WDL N Q
Sbjct: 349 KVMRFSTSGLDGKIAIWDLENMQ 371
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -3
Query: 547 GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGA 368
G+ F +GG D +R+F +++ + H + V ++ +S A+G DG
Sbjct: 240 GEKFVAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLS------YASGSEDGT 293
Query: 367 ITLW 356
I +W
Sbjct: 294 IRIW 297
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -3
Query: 547 GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGA 368
G+ F +GG D +R+F +++ + H + V ++ +S A+G DG
Sbjct: 240 GEKFVAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLS------YASGSEDGT 293
Query: 367 ITLW 356
I +W
Sbjct: 294 IRIW 297
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 397 IMAAGGLDGAITLWDLYNSQAMK*SHNVI 311
++A G +DG I WD + Q K S++V+
Sbjct: 270 VLAVGYVDGDILFWDFSDGQKGKPSNHVV 298
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,216,760
Number of Sequences: 28952
Number of extensions: 233086
Number of successful extensions: 607
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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