Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0403
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    33   0.014
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    31   0.10 
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    30   0.13 
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   6.7  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    24   8.8  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    24   8.8  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    24   8.8  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 33.5 bits (73), Expect = 0.014
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 302 LSGEDMGTSAEKRRGLFASTDRRALQQLSLPPPERRLTILSPHSPMA 162
           LS E  G+ A + R  +   D+R +++  L  P+R+   LSP SP +
Sbjct: 49  LSMELFGSQASRSRAFYYGEDKRKIEKKMLDTPDRKSYSLSPISPQS 95


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 30.7 bits (66), Expect = 0.10
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 341 PVHSQLGRSFGDYEQRCTSWPDAPGRCLYLD 433
           P H ++G    D +++  +W D+ GRC+ LD
Sbjct: 111 PEHEKIGFFPKDIDRKTANWIDSEGRCILLD 141


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -3

Query: 317 PARRALSGEDMGTSAEKRRGLFASTDRRALQQLSLPPPERRLTILSPHSPMAVMTELQWP 138
           P +    G D+GTS+     +  S+   +   +  P  +R  +I +P +P  V+ ++  P
Sbjct: 136 PLKWESPGRDIGTSSRDSANVSRSSSMMSSHPIPTPAIQRTSSIPNPLTPSYVVFDVAKP 195

Query: 137 VP 132
           VP
Sbjct: 196 VP 197


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 290 DMGTSAEKRRGLFASTDRRALQQLSLPPPERRLTILSPHSPMA 162
           D+  S    R L +ST      +++ P P+R  TI SP+SP++
Sbjct: 391 DVTRSVSDHRILSSSTINDG--EVAPPLPQRSRTISSPNSPLS 431


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 123 NAG-WDRPLEFRHHSHRTVRAEDRQPALRR 209
           N+G W+  +EF    H +   +D+QP  R+
Sbjct: 103 NSGCWESVVEFIEDQHESYMRQDQQPDRRK 132


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 126 AGWDRPLEFRHHSHRTVRAEDRQPALRRGQTEL 224
           +G+DR L       R ++ E  Q A+RRG T +
Sbjct: 2   SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAI 34


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = +3

Query: 45  KNLGCFRIGAWKNQFRQHHSFLASATNAGWDRPLEFRHHSHRTVRAEDRQPALRRGQTEL 224
           KN  CF   +  +Q+    + L  ATN G +   + R+   +    ED    L      L
Sbjct: 102 KNTNCFSESSQVDQYSVTETNLQYATNIGLNLLQQLRYLRLQLSEKEDLHKKLSVDNAHL 161

Query: 225 LKSTTIGAS 251
           +K   + +S
Sbjct: 162 IKQLDLLSS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,046
Number of Sequences: 5004
Number of extensions: 30758
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)