Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0403
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532... 29 1.2
03_06_0674 - 35449373-35449465,35449959-35450112,35450763-354508... 29 1.2
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 28 3.8
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311... 28 3.8
01_05_0052 + 17601317-17602869,17603315-17603432 28 3.8
11_06_0350 + 22573760-22575262 27 5.0
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142... 27 5.0
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 27 6.6
09_01_0003 - 95371-95433,95485-95715,95809-95862,96730-96972,985... 27 6.6
08_02_0617 + 19363232-19363297,19364368-19364571,19364652-193649... 27 6.6
12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439... 27 8.7
10_08_0841 - 20948719-20948919,20949624-20950388,20950475-209510... 27 8.7
10_08_0365 + 17224777-17224852,17224949-17224989,17225175-172252... 27 8.7
09_02_0223 + 5977138-5977459,5979842-5980842 27 8.7
04_04_0976 + 29839697-29840350 27 8.7
>05_05_0165 +
22851863-22852566,22852811-22852964,22853112-22853261,
22853769-22853930,22854070-22854242,22854330-22854396,
22854556-22854722,22855216-22855374,22856187-22856276,
22856392-22856483,22856587-22856681,22857328-22857405,
22858364-22858459,22859132-22859206,22859290-22859381,
22859462-22859624,22859734-22859794,22860016-22860116,
22860567-22860614
Length = 908
Score = 29.5 bits (63), Expect = 1.2
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = -3
Query: 218 SLPPPERRLTILSPHSPMAVMTELQWPVPSGIRGRRKKGMVLPKLILP 75
+LPPP RL + SP P L+ P G R RR++G VL L P
Sbjct: 5 TLPPPHLRLDLCSPRLP-----PLRSP---GCRRRRRRGRVLSALSSP 44
>03_06_0674 -
35449373-35449465,35449959-35450112,35450763-35450860,
35450947-35451234,35451313-35451503,35451789-35452006,
35452314-35452653,35452726-35453167
Length = 607
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 341 PVHSQLGRSFGDYEQRCTSWPDAPGRC 421
PVH +G G+ E+ TS+ D PGRC
Sbjct: 417 PVHISVGDG-GNREKMATSYADEPGRC 442
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 212 PPPERRLTILSPHSPMAVMTELQWP 138
PPPERRL L P P ++WP
Sbjct: 122 PPPERRLNCLIP-PPHGYKVPIKWP 145
>03_02_0895 +
12230683-12230844,12230937-12230991,12231106-12231169,
12231292-12231334,12231509-12231607,12231710-12231778,
12231912-12232245,12232317-12232471,12232592-12233287
Length = 558
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 356 TASERDVRESRGLPARRALSGEDM--GTSAEKRRGLFASTDRRAL 228
T +R RES G P RRA + GT+ G A+ ++R L
Sbjct: 256 TTRQRAARESNGAPGRRARKAASVTPGTAEHGGAGASATVEQRRL 300
>01_05_0052 + 17601317-17602869,17603315-17603432
Length = 556
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 320 LPARRALSGEDMGTSAEKRRGLFASTDRRALQQLSLPPP 204
LPA +GE S RGLFA+ R L PPP
Sbjct: 64 LPALARWAGEATAVSLLTSRGLFAAAWRLLLAPSPTPPP 102
>11_06_0350 + 22573760-22575262
Length = 500
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 53 RMLQNRCVEESVSAAPFLSCVCHECRMGPA 142
RM+QN C +S++ +S +C E R+ A
Sbjct: 351 RMVQNGCFADSITYGALISGLCKESRLEEA 380
>11_06_0155 -
20712601-20713553,20713618-20714000,20714240-20714271,
20714315-20714571,20714699-20714724,20714894-20715081,
20715302-20715595,20715714-20715752,20715827-20715944,
20716076-20716157,20716610-20716668,20717156-20717221,
20717358-20717447,20718142-20718236
Length = 893
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 33 QPFDKNLGCFRIGAWKNQFRQHHSFLASATNAGWDRPLE 149
Q + G F+I WK ++ +++SF S W +P +
Sbjct: 855 QDLPVSCGKFKIRDWKTKYERNYSFSFSTYRIEWLKPAD 893
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 290 LHQKERAGRVGRGFRVHPVHSQLGRSFGDYEQRCTSWPDAPGRC 421
+H + G +G F HP + GR F Y T P GRC
Sbjct: 270 VHFDSQFGLMGMAF--HPNFATNGRFFASYNCDRTKSPSCSGRC 311
>09_01_0003 -
95371-95433,95485-95715,95809-95862,96730-96972,
98544-99317
Length = 454
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 296 GEDMGTSAEKRRGLFASTDRRALQQLSLPPPERR 195
GED +K++ L S + L LPPP+R+
Sbjct: 12 GEDKKKKKKKKKPLKPSQEEEEALPLPLPPPDRK 45
>08_02_0617 +
19363232-19363297,19364368-19364571,19364652-19364970,
19365259-19365578,19365636-19365864,19365979-19366250
Length = 469
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 100 IPFLRLPRMPDGTGHWSSVITAIGLCGLRIVSLRSGGGRLS 222
+PF + P +P G G S + GL V+ + GGG ++
Sbjct: 94 LPFCQFPPVPAGGGGTSLLAAGSGLAQFGGVAAQLGGGMIA 134
>12_02_1032 +
25542420-25542573,25543511-25543577,25543816-25543918,
25544435-25544505,25544639-25544702,25545260-25545316,
25545435-25545593,25545967-25546035,25546111-25546202,
25546579-25546657,25546923-25547088,25547480-25547604,
25547737-25548078,25548271-25548432,25548520-25548624,
25548766-25548860,25548948-25549044,25549848-25550165,
25550228-25550296
Length = 797
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 287 MGTSAEKRRGLFASTDRRALQQLSLPPPERRLTILSPHSPMA 162
+ T ++++G A QQ P P+ +LSP SPM+
Sbjct: 691 VATEQQQQQGHHQDAAAEAPQQQQQPQPQPPPLLLSPRSPMS 732
>10_08_0841 -
20948719-20948919,20949624-20950388,20950475-20951023,
20951097-20951237,20951313-20951519,20951556-20951724,
20951899-20952003,20952087-20952208,20952291-20952412,
20953234-20953516
Length = 887
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -3
Query: 290 DMGTSAEKRRGLFASTDRRALQQLSLPPPERRLTILSPHSPMAVMTELQW 141
D +A R G+ +S+ RA + P PE ++ + P + + L W
Sbjct: 9 DAWETASARSGVSSSSSGRATAAAAAPAPENKVFVALPAQHKSGRSTLAW 58
>10_08_0365 +
17224777-17224852,17224949-17224989,17225175-17225244,
17225338-17225486,17225940-17226035,17226481-17226551,
17227077-17227138,17227311-17227374,17227463-17227547,
17227631-17227757,17228241-17228374,17228808-17229122
Length = 429
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 156 HHSHRTVRAEDRQPALRRGQTEL 224
HH H + A+DR P +G T +
Sbjct: 393 HHHHHSAAADDRSPPAAKGGTAI 415
>09_02_0223 + 5977138-5977459,5979842-5980842
Length = 440
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 215 LPPPERRLTILSPHSPMAVMTELQWPVPSG 126
LPPP L + SP SP E P PSG
Sbjct: 380 LPPPPTMLMLPSPPSPPPSDAEGDAPPPSG 409
>04_04_0976 + 29839697-29840350
Length = 217
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 323 GLPARRALSGEDMGTSAEKRRGLFASTDRRALQQLSLPPPER 198
G+ RRA + +R + A+T RR Q+ PPP R
Sbjct: 146 GVERRRASTANPGDMLLRRRLQILATTRRRCWQRRRPPPPSR 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,132,927
Number of Sequences: 37544
Number of extensions: 262174
Number of successful extensions: 836
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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