Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0403
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.41 
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)            29   1.3  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)                   27   5.0  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_3998| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  
SB_731| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.8  
SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)                    27   8.8  
SB_41945| Best HMM Match : Disintegrin (HMM E-Value=2.4)               27   8.8  
SB_8221| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 45  KNLGCFRIGAWKNQFRQHHSFLASA 119
           KNLGC R+    N++RQ   FLASA
Sbjct: 157 KNLGCTRVPGHHNKYRQVLEFLASA 181


>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
          Length = 449

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 287 MGTSAEKRRGLFASTDRRALQQL-SLPPPERRLTILSPHSPMAVMTELQWPVPSGIRG 117
           MG+S    +G+  ST       + SLP P + +   SP+ P  +M     P P GI G
Sbjct: 144 MGSSPNPPKGIMGSTPNPPKGIMGSLPNPHKEIMGSSPNPPKGIMGSTPNP-PKGIMG 200


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 177 RAEDRQPALRRGQ-TELLKSTTIGASEQTASFLG*SAHVFTRKS 305
           R +   PA  +G+ +E +KSTT G+S  + S L  ++ + +RKS
Sbjct: 310 RTKSPSPAKNQGKLSERVKSTTPGSSASSTSSLNGTSSLTSRKS 353


>SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)
          Length = 611

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 135 DRPLEFRHHSHRTVRAEDRQPALRRGQTELLKSTTIGASEQ 257
           D P   RHH      A+  +P LRR Q E    T + ++ Q
Sbjct: 274 DEPPAKRHHHTDHAPAQRGRPPLRRAQDESRAKTELNSTSQ 314


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 144  LEFRHHSHRTVRAEDRQPALRRGQTELLKSTTIGASE 254
            LE +   HR   A+D  P++R+ Q  LL     G +E
Sbjct: 2059 LELQKQRHRDKGADDVMPSIRKRQRGLLMRLQAGQAE 2095


>SB_3998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 74  VEESVSAAPFLS--CVCHECRMGPAIGVPSSQP*DCAG*GSSACAQEGAD*AVEEHD 238
           ++ SV   P L+     H  R+G  +   SS   DC    ++A  +EG D  +  HD
Sbjct: 27  LQSSVCHGPDLTEELAVHAVRLGSRLPGRSSNAVDCVQCAATAAGREGGDFVLCTHD 83


>SB_731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 74  VEESVSAAPFLS--CVCHECRMGPAIGVPSSQP*DCAG*GSSACAQEGAD*AVEEHD 238
           ++ SV   P L+     H  R+G  +   SS   DC    ++A  +EG D  +  HD
Sbjct: 18  LQSSVCHGPDLTEELAVHAVRLGSRLPGRSSNAVDCVQCAATAAGREGGDFVLCTHD 74


>SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)
          Length = 510

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 159 DDGTPMAGPIRHSWQTQERNGAAETDSSTHRF*SIRG 49
           DDGT     I H+   +ER        S   F S+RG
Sbjct: 377 DDGTQGVAEIGHTGSARERKSTERRPGSPRMFYSLRG 413


>SB_41945| Best HMM Match : Disintegrin (HMM E-Value=2.4)
          Length = 626

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 278 SAEKRRGLFASTDRRALQQLSLPPPER 198
           S E R G+     R ALQQ+  PP ER
Sbjct: 513 SWEFRNGILLELQRGALQQIPYPPIER 539


>SB_8221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 77  EESVSAAPFLS--CVCHECRMGPAIGVPSSQP*DCAG*GSSACAQEGAD*AVEEHD 238
           + SV   P L+     H  R+G  +   SS   DC    ++A  +EG D  +  HD
Sbjct: 31  QSSVCHGPDLTEELAVHAVRLGSRLPGRSSNAVDCVQCAATAAGREGGDFVLCNHD 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,324,054
Number of Sequences: 59808
Number of extensions: 267570
Number of successful extensions: 787
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)