Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0403
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.0  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   4.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 317 PARRALSGEDMGTSAEKRRGLFASTDRRALQQLSLPPPERRLTIL 183
           P +R LSG       ++R      TD+++    +LP  +  L IL
Sbjct: 282 PEQRILSGYHAIAGGQQRPDENVVTDKKSKVNFALPELQHNLNIL 326


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 206 PERRLTILSPHSPMAV 159
           PER  T  +PHSP+ V
Sbjct: 441 PERWTTPTTPHSPLLV 456


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 209 PPERRLTILSPHSPM 165
           PP R+L  L PH+ M
Sbjct: 96  PPTRKLPPLHPHTAM 110


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 420 HLPGASGQLVHLCS 379
           +LP  SG+ V LCS
Sbjct: 272 YLPSDSGEKVSLCS 285


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 221 LSLPPPERRLTILSPHSPMAVMTELQWP 138
           +S PPP   ++ +SP S  A+++ ++ P
Sbjct: 377 MSQPPPNFGVSQVSPVSMSALVSAVRSP 404


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 230 LQQLSLPPPERRLTILSPHSPMA 162
           L Q  LPP E  L  + PH   A
Sbjct: 484 LPQWCLPPREAPLVGVQPHQDSA 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,162
Number of Sequences: 438
Number of extensions: 2311
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)