Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0403
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74790.1 68414.m08665 expressed protein contains similarity t...    32   0.19 
At2g04700.1 68415.m00480 ferredoxin thioredoxin reductase cataly...    28   2.4  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    28   3.1  
At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP]...    27   4.1  
At5g39970.1 68418.m04847 expressed protein low similarity to up-...    27   5.5  
At2g42320.1 68415.m05238 nucleolar protein gar2-related contains...    27   5.5  
At1g04430.1 68414.m00434 dehydration-responsive protein-related ...    27   7.2  
At1g02065.2 68414.m00127 squamosa promoter-binding protein-like ...    27   7.2  
At1g02065.1 68414.m00128 squamosa promoter-binding protein-like ...    27   7.2  
At5g15900.1 68418.m01860 expressed protein several hypothetical ...    26   9.5  
At4g14360.1 68417.m02212 dehydration-responsive protein-related ...    26   9.5  

>At1g74790.1 68414.m08665 expressed protein contains similarity to
           hedgehog-interacting protein GI:4868122 from [Mus
           musculus]
          Length = 695

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 290 LHQKERAGRVGRGFRVHPVHSQLGRSFGDYEQRCTSWPDAPGRC 421
           +H     G +G  F  HP  +Q GR F  +    + WP   GRC
Sbjct: 262 IHFDTEFGMMGMAF--HPKFAQNGRFFASFNCDKSKWPGCTGRC 303


>At2g04700.1 68415.m00480 ferredoxin thioredoxin reductase catalytic
           beta chain family protein contains Pfam profile: PF02943
           ferredoxin thioredoxin reductase catalytic beta
          Length = 146

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 281 CPCLHQKERAGRVGRGF 331
           CPC H  ++A  VG+GF
Sbjct: 85  CPCRHYDDKAAEVGQGF 101


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
           binding domain-containing protein contains Pfam profiles
           PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
           binding domain
          Length = 2176

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 71  CVEESVSAAPFLSCVCHECRMG 136
           CV + V AAP    +C +CR G
Sbjct: 112 CVNDGVEAAPSADWMCSDCRTG 133


>At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP],
           putative / PEP carboxykinase, putative / PEPCK, putative
           similar to phosphoenolpyruvate carboxykinase
           [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0
           Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
           (PEP carboxykinase) (Phosphoenolpyruvate carboxylase)
           (PEPCK) {Zea mays}; contains Pfam profile PF01293:
           phosphoenolpyruvate carboxykinase
          Length = 671

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 93  QHHSFLASATNAGWDRPLEFRHHSHRTVRAEDRQPALR 206
           QHHS  + AT A  D  L+F H  +    AE  + A++
Sbjct: 129 QHHSIFSPATGAVSDSSLKFTHVLYNLSPAELYEQAIK 166


>At5g39970.1 68418.m04847 expressed protein low similarity to
           up-regulated by thyroid hormone in tadpoles; expressed
           specifically in the tail and only at metamorphosis;
           membrane bound or extracellular protein; C-terminal
           basic region [Xenopus laevis] GI:1234787
          Length = 690

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 326 GFRVHPVHSQLGRSFGDYEQRCTSWPDAPGRC 421
           G   HP   + GR F  +      WP+  G+C
Sbjct: 273 GIAFHPDFLKNGRFFASFNCDRVKWPECSGKC 304


>At2g42320.1 68415.m05238 nucleolar protein gar2-related contains
           weak similarity to Swiss-Prot:P41891 protein gar2
           [Schizosaccharomyces pombe]
          Length = 669

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 42  DKNLGCFRIGAWKNQFRQHHSFLASATNAG 131
           D+N G F I  WKN FR     +     AG
Sbjct: 376 DQNQGTFSISLWKNAFRDALQRICPMRGAG 405


>At1g04430.1 68414.m00434 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 623

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 212 PPPERRLTILSPHSPMAVMTELQWP 138
           PPPERR   L P  P      ++WP
Sbjct: 123 PPPERRFNCLIP-PPSGYKVPIKWP 146


>At1g02065.2 68414.m00127 squamosa promoter-binding protein-like 8
           (SPL8) identical to squamosa promoter binding
           protein-like 8 [Arabidopsis thaliana] GI:5931679;
           contains Pfam profile PF03110: SBP domain
          Length = 246

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 66  IGAWKNQFRQHHSFLASATNAGWDRPLEFRHHSH 167
           + ++ NQ +QHH  L   TN+  ++ L   HH H
Sbjct: 53  LSSFSNQQQQHHLTLYGQTNSN-NQFLHHHHHHH 85


>At1g02065.1 68414.m00128 squamosa promoter-binding protein-like 8
           (SPL8) identical to squamosa promoter binding
           protein-like 8 [Arabidopsis thaliana] GI:5931679;
           contains Pfam profile PF03110: SBP domain
          Length = 333

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 66  IGAWKNQFRQHHSFLASATNAGWDRPLEFRHHSH 167
           + ++ NQ +QHH  L   TN+  ++ L   HH H
Sbjct: 53  LSSFSNQQQQHHLTLYGQTNSN-NQFLHHHHHHH 85


>At5g15900.1 68418.m01860 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 426

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 168 YGCDDGTPMAGPIR 127
           YGC+DG P+  P+R
Sbjct: 115 YGCEDGLPVFDPVR 128


>At4g14360.1 68417.m02212 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 608

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 212 PPPERRLTILSPHSPMAVMTELQWP 138
           PPPERR   L P  P      ++WP
Sbjct: 115 PPPERRFNCLIP-PPNGYKVPIKWP 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,060,395
Number of Sequences: 28952
Number of extensions: 181867
Number of successful extensions: 528
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)