Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0402
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    30   0.27 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   1.5  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   4.4  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 333 KDNQNPKIFKSADCFLFAEHVKPEDDTWTAFDYLKDVTKLTFTKNNITMKYIPTEALK 506
           KD  NP+I +    F+ + H++    +  AFD   DV K   T+  I  K IP + L+
Sbjct: 675 KDTVNPEIDEQLANFVVSSHIR----SHPAFDPNMDVLKKVPTETGIDAKPIPQDLLR 728


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +3

Query: 339 NQNPKIFKSADCFLFAEHVKPEDDT--WTAFDYLKDVTKLTFTKNNITM---KYIPTEAL 503
           N+N K  +  D F + +H+    D   W+ FD+LK+   + F   +I M   +   + A 
Sbjct: 420 NEN-KCIQLRDYFDYRKHICIVTDLFGWSVFDFLKNNNYIPFPLKHIQMLSQQLFKSVAF 478

Query: 504 KYTKSVLNLDIKYGNI 551
            ++  +++ D+K  N+
Sbjct: 479 LHSLGLVHTDLKPENV 494


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 131 TVVFKQKIGTVIFNMSTNMNFWRVIAVMCVATAFVQSKSTHHQKRATRPNICDL 292
           +VV +   G V        N   V+   C   A + ++  HH +R   PNI  L
Sbjct: 35  SVVGEGSFGKVYLAAHLLTNTKVVLKSSCRKQAIILAREIHHHRRLLHPNITRL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,941
Number of Sequences: 5004
Number of extensions: 43618
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)