Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0402
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    30   1.3  
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    30   1.3  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    27   7.1  
Z77662-7|CAB01197.1|  349|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +3

Query: 432 LKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKV 560
           +KD+T +  ++N +  + +PT  L+Y K  + L++ Y NIE +
Sbjct: 102 MKDLTIIDLSRNQL--REVPTN-LEYAKGSIVLNLSYNNIETI 141


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +3

Query: 432 LKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKV 560
           +KD+T +  ++N +  + +PT  L+Y K  + L++ Y NIE +
Sbjct: 102 MKDLTIIDLSRNQL--REVPTN-LEYAKGSIVLNLSYNNIETI 141


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = +3

Query: 336 DNQNPKIFKSADCFLFAEHVKPE-DDTW-----TAFDYLK 437
           DN+N K F+ + C  + EH + E DD+      T+F+Y K
Sbjct: 657 DNKNEKYFEDSVCLAYPEHKRHEYDDSLRRLLNTSFEYSK 696


>Z77662-7|CAB01197.1|  349|Caenorhabditis elegans Hypothetical
           protein F47B8.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 414 WTAFDYLKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGA 566
           +++F   KD+T+L F  N  T        L YTK V   D     IE VG+
Sbjct: 173 FSSFPTSKDITELQFVANKFTGSNSAFLLLSYTKEV---DTVREQIEHVGS 220


>AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical
           protein Y57G7A.6 protein.
          Length = 883

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 368 SAFKYLRILIVFGAVTSNVPVCYCTLDHRC 279
           SA KY   +++ GAV   +   +C  D  C
Sbjct: 753 SALKYTVTILIIGAVLGTIAFLWCWRDQNC 782


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,556,783
Number of Sequences: 27780
Number of extensions: 251643
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)