Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0402
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49610.1 68414.m05562 F-box family protein contains F-box dom...    30   1.2  
At4g39500.1 68417.m05586 cytochrome P450, putative simialrity to...    29   2.2  
At2g40925.1 68415.m05051 F-box family protein contains F-box dom...    29   2.9  
At2g30320.1 68415.m03690 tRNA pseudouridine synthase family prot...    28   3.8  
At2g36380.1 68415.m04464 ABC transporter family protein related ...    27   8.7  
At1g66950.1 68414.m07612 ABC transporter family protein similar ...    27   8.7  

>At1g49610.1 68414.m05562 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 354

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -2

Query: 440 VFKVVKGCPGVIFWLYVFSEQEAI---SAFKYLRILIVFGAVTSNVPVCYCTL 291
           + K++ GCP +      F +Q  +   +    L+IL + G++ + V +C+C+L
Sbjct: 150 IAKILSGCPIIESLTLHFCDQLMVLDLTKSPSLKILEIHGSIWAKVDICFCSL 202


>At4g39500.1 68417.m05586 cytochrome P450, putative simialrity to
           cytochrome P450 CYP86A1, Arabidopsis thaliana,
           EMBL:X90458
          Length = 469

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +3

Query: 378 LFAEHVKPED----DTWTAFDYLKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYG 545
           +F  HVKP+       W  F + K + +   T + +  KYI  +  +  +S    DI YG
Sbjct: 176 IFFRHVKPKFLWKLQNWMGFGHEKKMIEANATFDRVCAKYISDKRGEIIRSQRFSDISYG 235

Query: 546 NIE 554
             E
Sbjct: 236 EPE 238


>At2g40925.1 68415.m05051 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 232 KSSCNAHDCDHPPEVHVG*HIKNDSSNFL 146
           K  CN HDC+ PP++ +   I+  + +F+
Sbjct: 17  KDMCNRHDCEIPPDLMIEILIRLPTKSFM 45


>At2g30320.1 68415.m03690 tRNA pseudouridine synthase family protein
           similar to pseudouridine synthase [Schizosaccharomyces
           pombe] GI:6469502; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 510

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 186 MLVDILKMTVP--IFCLKTTV*RVTTTSLHYSNFERRHHSSNSLCPP 52
           M V  L++ +P  +F   T + RVT   L +S+      SS SL PP
Sbjct: 1   MAVSFLRIPIPSRVFWYPTRLIRVTPALLRFSSSAAFQPSSTSLSPP 47


>At2g36380.1 68415.m04464 ABC transporter family protein related to
            multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = -3

Query: 565  APTFSILPYLMSKLSTDFVYFNASVGIYFMVI 470
            A  +S +PY +S+++ + +Y     G+Y +++
Sbjct: 1267 AGMYSAIPYAISQVAVEIMYNTIQTGVYTLIL 1298


>At1g66950.1 68414.m07612 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]
          Length = 1454

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = -3

Query: 565  APTFSILPYLMSKLSTDFVYFNASVGIYFMVI 470
            A  +S +PY +S+++ + +Y     G+Y +++
Sbjct: 1268 AGMYSAIPYAISQVAVEIMYNTIQTGVYTLIL 1299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,552,971
Number of Sequences: 28952
Number of extensions: 223662
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)