Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0401
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    28   1.3  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    27   1.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.1  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   6.7  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   8.8  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.8  

>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/65 (21%), Positives = 32/65 (49%)
 Frame = -2

Query: 320 DILYKIIHSLLDSPELLSQISLNIKFSARRVNQNNLFALLIYKNNISYYNPITRMCRTYN 141
           D L   IH + +SP +   I  ++  S ++  +   F L + K + +  +  + +C+  +
Sbjct: 325 DFLISNIHKVSESPRVWVTILSSLSRSCQKFRKKIAFTLFVGKQSKNDDSDFSSLCQRLD 384

Query: 140 ELARS 126
           E++ S
Sbjct: 385 EISAS 389


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = -2

Query: 392 RQIRAKTI-KL*HAVTRRSTYMH*SDILYKIIHSLLDSPELLSQI---SLNIKFSARRVN 225
           + +RAK + ++ + +     Y    + ++ I++ +++  E L      S  I+   + +N
Sbjct: 147 KNLRAKGLNRIGNLIVPNDNYCRFEEWIFPILNKMVEEQETLGTHWTPSSFIRRLGKEIN 206

Query: 224 QNNLFALLIYKNNISYYNP 168
             +      YKNNI  Y+P
Sbjct: 207 DESSVLYWAYKNNIPIYSP 225


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 212  FALLIYKNNISYYNPITRMCRTYNELARSSPELDIFTC 99
            F L ++ + +S     T+  RT+ ELA +S  +++ +C
Sbjct: 3771 FVLNLFDSLLSSIETATKNMRTFKELAETSSFIEMSSC 3808


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 185 ISYYNPITRMCRTYNELARSSPELDIFTCRLVTFRKMFKGILHFINR 45
           I+YY  I    RTY  L    P L     R+    K  +G L F++R
Sbjct: 319 ITYYGKILNANRTYYLLRSQPPFLTDMALRVYERIKNEEGSLDFLHR 365


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 187 IYLTIIPLPECVVPI-TNWQGRHL 119
           +YLT++P+PE   P+   W+ + +
Sbjct: 270 MYLTLLPVPETYAPVLLRWRAQRI 293


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/76 (19%), Positives = 31/76 (40%)
 Frame = -2

Query: 284 SPELLSQISLNIKFSARRVNQNNLFALLIYKNNISYYNPITRMCRTYNELARSSPELDIF 105
           SPE +  +   +++    + +N  F L     +  ++    +   T NEL   SPE  + 
Sbjct: 70  SPEYVENLESRVRYLETLLKKNTNFDLSSNSPSFLFFLREQKFQAT-NELENMSPERKVI 128

Query: 104 TCRLVTFRKMFKGILH 57
              ++ +  +F    H
Sbjct: 129 FTSMINYGNLFVDAKH 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,871
Number of Sequences: 5004
Number of extensions: 46277
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)