Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0401
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0309 - 14886764-14888004,14888237-14888300                       29   2.3  
04_04_1254 + 32112471-32112593,32112645-32112665,32112882-321131...    28   5.2  
12_02_0156 - 14532000-14532098,14532669-14534330,14534445-145346...    28   6.9  
07_03_0365 + 17288071-17288255,17288339-17288678                       28   6.9  
05_03_0418 + 13700855-13700942,13701602-13701728,13701845-137019...    28   6.9  

>01_03_0309 - 14886764-14888004,14888237-14888300
          Length = 434

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 406 VFRNCGKYEQRLLNYNMQSLEDRRTCTDLI 317
           +F NC   +Q L +Y +QSL D +T TD++
Sbjct: 299 IFLNCSGEKQNLCHYFLQSLRD-KTTTDML 327


>04_04_1254 +
           32112471-32112593,32112645-32112665,32112882-32113100,
           32113354-32113554,32114419-32114578,32114988-32115225,
           32115326-32115447,32115852-32115880
          Length = 370

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 19  SSTRITLTYLLIKWRMPL 72
           SSTRI  TYL+  WR PL
Sbjct: 348 SSTRIWATYLMTLWRYPL 365


>12_02_0156 -
           14532000-14532098,14532669-14534330,14534445-14534660,
           14534730-14534907,14535065-14535276
          Length = 788

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 10  WRRSSTRITLTYLLIKWRMPLNIFLNVTNLQVKISNSGDDLASSL*VRHIRVM 168
           WRR S    L Y+ +KW M   + L +T +   + N   +  S L + H+ +M
Sbjct: 82  WRRRSNVEVLQYIFLKWAMAFLVGL-LTGVIASLINLAIENISGLKMLHMFLM 133


>07_03_0365 + 17288071-17288255,17288339-17288678
          Length = 174

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -2

Query: 221 NNLFALLIYKNNISYYNPITR-MCRTYNELARSSPELDIFTCRLVTFRKMFKG 66
           N +  L I KN+ +Y++PITR +   YN+  R +PE  I T R + + +  KG
Sbjct: 33  NQVDGLCISKNDQAYHSPITRSVLGKYNK--RCTPEDIITTPRRMGYVEDDKG 83


>05_03_0418 +
           13700855-13700942,13701602-13701728,13701845-13701916,
           13702079-13702153,13702290-13702361,13702477-13702638,
           13702726-13702800,13702880-13702951,13703040-13703108,
           13703196-13703264,13703355-13703429,13703522-13703593,
           13703668-13703737,13703920-13704361,13704442-13704573,
           13704664-13704803,13704910-13705129,13705301-13705536,
           13705732-13706256
          Length = 930

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -2

Query: 287 DSPELLSQISLNIKFSARRVNQNNLFALLIYKNNISYYNPITRMCRTYNELARSSPELDI 108
           D  + L  +  N+         NNL   L+Y N+ +Y N   R C    +    S  L+ 
Sbjct: 427 DVVKFLPSLQANLSSKLNSCTPNNLG--LVYSNDDAYLNVDIRACPVNQKRFNYSQVLNC 484

Query: 107 FTCRLVTFR 81
           F   L T++
Sbjct: 485 FNLTLQTYK 493


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,384,149
Number of Sequences: 37544
Number of extensions: 257942
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)