Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0401
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016670-4|AAB66105.2|  232|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF016670-3|AAB66106.1|  232|Caenorhabditis elegans Hypothetical ...    30   1.2  

>AF016670-4|AAB66105.2|  232|Caenorhabditis elegans Hypothetical
           protein K02F6.5 protein.
          Length = 232

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -3

Query: 445 LS*F*VNS*LLLHVFRNCGKYEQRLLNYNMQSLEDRRTCTDLIYYIR 305
           LS + VN+  L H+ R CG   ++L N+N+ SL    T  D + Y++
Sbjct: 117 LSDYQVNNNDLQHMVRICGDILRKLGNHNILSLPSVYTFDDYVNYLK 163


>AF016670-3|AAB66106.1|  232|Caenorhabditis elegans Hypothetical
           protein K02F6.8 protein.
          Length = 232

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -3

Query: 445 LS*F*VNS*LLLHVFRNCGKYEQRLLNYNMQSLEDRRTCTDLIYYIR 305
           LS + VN+  L H+ R CG   ++L N+N+ SL    T  D + Y++
Sbjct: 117 LSDYQVNNNDLQHMVRICGDILRKLGNHNILSLPSVYTFDDYVNYLK 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,061
Number of Sequences: 27780
Number of extensions: 253871
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)