Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0401
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 219 QFVCIANLQKQYILL*SHYPNVSYL*RTGKVVT*VRYFY 103
           +FVCIA  +   +   + +P+V+YL   G +    R FY
Sbjct: 192 EFVCIATPEAIELHFTTDHPSVAYL-LVGSLKGIARQFY 229


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 394 CGKYEQRLLNYNMQS 350
           CG++E+RLLN  + S
Sbjct: 51  CGRHEKRLLNELLSS 65


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 394 CGKYEQRLLNYNMQS 350
           CG++E+RLLN  + S
Sbjct: 51  CGRHEKRLLNELLSS 65


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 281 PELLSQISLNIKFSARRVNQNNLFALLIYKNN 186
           P+++S +S N K+S      NN      Y NN
Sbjct: 312 PKIISSLSNNYKYSNYNNYNNNYNNYNNYNNN 343


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 230 VNQNNLFALLIYKNNISYYNPIT 162
           +  N  FAL+IY N+ + +  +T
Sbjct: 203 IGDNEGFALIIYNNSDNSFQRLT 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,883
Number of Sequences: 438
Number of extensions: 3220
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)